RABEPK (Rab9 effector protein with kelch motifs) - Rat Genome Database

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Gene: RABEPK (Rab9 effector protein with kelch motifs) Sus scrofa
Analyze
Symbol: RABEPK
Name: Rab9 effector protein with kelch motifs
RGD ID: 14129236
Description: ASSOCIATED WITH genetic disease (ortholog); High Myopia (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Rab9 effector p40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,905,210 - 265,929,061 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,672,840 - 299,702,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
RABEPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,905,210 - 265,929,061 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,672,840 - 299,702,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABEPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389125,200,542 - 125,234,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9125,200,542 - 125,234,161 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,962,821 - 127,996,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369127,002,874 - 127,036,259 (+)NCBINCBI36Build 36hg18NCBI36
Celera998,610,755 - 98,644,425 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,575,423 - 97,609,024 (+)NCBIHuRef
CHM1_19128,111,877 - 128,146,185 (+)NCBICHM1_1
T2T-CHM13v2.09137,398,878 - 137,432,478 (+)NCBIT2T-CHM13v2.0
Rabepk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,662,946 - 34,690,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,667,568 - 34,689,924 (-)EnsemblGRCm39 Ensembl
GRCm38234,774,609 - 34,800,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,777,556 - 34,799,912 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,634,186 - 34,655,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,600,675 - 34,621,800 (-)NCBIMGSCv36mm8
Celera234,479,143 - 34,500,323 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.94NCBI
Rabepk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,460,205 - 38,481,077 (-)NCBIGRCr8
mRatBN7.2318,061,299 - 18,083,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,061,574 - 18,083,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,130,771 - 21,151,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,715,795 - 29,736,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0327,969,432 - 27,989,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,845,352 - 13,865,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,845,361 - 13,865,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,164,922 - 19,185,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,790,808 - 13,811,327 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,687,180 - 13,707,699 (-)NCBI
Celera312,783,843 - 12,804,301 (-)NCBICelera
Cytogenetic Map3p11NCBI
Rabepk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,061,838 - 3,091,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,061,838 - 3,096,693 (-)NCBIChiLan1.0ChiLan1.0
RABEPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,129,490 - 14,167,619 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,131,838 - 14,169,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0996,311,269 - 96,349,433 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,836,057 - 124,863,049 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,836,057 - 124,863,049 (+)Ensemblpanpan1.1panPan2
RABEPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1957,857,269 - 57,877,333 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl957,857,269 - 57,883,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,057,134 - 57,077,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0958,777,947 - 58,797,659 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl958,777,947 - 58,809,553 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,536,110 - 57,556,338 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0957,852,819 - 57,873,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0957,943,499 - 57,963,812 (-)NCBIUU_Cfam_GSD_1.0
Rabepk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,552,324 - 193,578,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,324,168 - 13,346,638 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,320,988 - 13,346,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABEPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11212,923,405 - 12,953,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1212,927,976 - 12,951,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660793,152,338 - 3,187,313 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabepk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247609,990,831 - 10,018,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247609,992,321 - 10,025,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RABEPK
1498 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1
Low 10 3 3 3 2 22 2 3 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006157   ⟹   ENSSSCP00000005998
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1265,905,381 - 265,929,058 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063390   ⟹   ENSSSCP00000038013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1265,905,210 - 265,929,061 (+)Ensembl
RefSeq Acc Id: NM_001244400   ⟹   NP_001231329
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,905,352 - 265,929,060 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654539   ⟹   XP_005654596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654541   ⟹   XP_005654598
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654543   ⟹   XP_005654600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,905,321 - 265,929,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013986587   ⟹   XP_013842041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,905,111 - 265,929,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013986596   ⟹   XP_013842050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11265,907,186 - 265,929,062 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005654596   ⟸   XM_005654539
- Peptide Label: isoform X1
- UniProtKB: A0A287BR94 (UniProtKB/TrEMBL),   A0A4X1UEW8 (UniProtKB/TrEMBL),   A0A8D0JAT4 (UniProtKB/TrEMBL),   A0A8D1AH69 (UniProtKB/TrEMBL),   A0A8D1BH81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654598   ⟸   XM_005654541
- Peptide Label: isoform X1
- UniProtKB: A0A287BR94 (UniProtKB/TrEMBL),   A0A4X1UEW8 (UniProtKB/TrEMBL),   A0A8D0JAT4 (UniProtKB/TrEMBL),   A0A8D1AH69 (UniProtKB/TrEMBL),   A0A8D1BH81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013842041   ⟸   XM_013986587
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JAT4 (UniProtKB/TrEMBL),   A0A8D1AH69 (UniProtKB/TrEMBL),   A0A8D1BH81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654600   ⟸   XM_005654543
- Peptide Label: isoform X3
- UniProtKB: F1SKQ3 (UniProtKB/TrEMBL),   A0A4X1UAS7 (UniProtKB/TrEMBL),   A0A8D0J7I4 (UniProtKB/TrEMBL),   A0A8D1A8M7 (UniProtKB/TrEMBL),   A0A8D1BKR6 (UniProtKB/TrEMBL),   A0A8D2BVH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231329   ⟸   NM_001244400
- UniProtKB: A0A8D1AH69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013842050   ⟸   XM_013986596
- Peptide Label: isoform X4
- UniProtKB: A0A8D0JAT4 (UniProtKB/TrEMBL),   A0A8D1AH69 (UniProtKB/TrEMBL),   A0A8D1BH81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005998   ⟸   ENSSSCT00000006157
RefSeq Acc Id: ENSSSCP00000038013   ⟸   ENSSSCT00000063390


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005599 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021594 UniProtKB/TrEMBL
  ENSSSCG00025029757 UniProtKB/TrEMBL
  ENSSSCG00030047191 UniProtKB/TrEMBL
  ENSSSCG00035055812 UniProtKB/TrEMBL
  ENSSSCG00040002391 UniProtKB/TrEMBL
  ENSSSCG00045035265 UniProtKB/TrEMBL
  ENSSSCG00055026943 UniProtKB/TrEMBL
  ENSSSCG00060077710 UniProtKB/TrEMBL
  ENSSSCG00065047247 UniProtKB/TrEMBL
  ENSSSCG00070016388 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006157 ENTREZGENE
  ENSSSCT00000006157.3 UniProtKB/TrEMBL
  ENSSSCT00000063390 ENTREZGENE
  ENSSSCT00000063390.1 UniProtKB/TrEMBL
  ENSSSCT00005034141.1 UniProtKB/TrEMBL
  ENSSSCT00005034182.1 UniProtKB/TrEMBL
  ENSSSCT00025040478.1 UniProtKB/TrEMBL
  ENSSSCT00025040555.1 UniProtKB/TrEMBL
  ENSSSCT00030065843.1 UniProtKB/TrEMBL
  ENSSSCT00030065868.1 UniProtKB/TrEMBL
  ENSSSCT00035074504.1 UniProtKB/TrEMBL
  ENSSSCT00035074518.1 UniProtKB/TrEMBL
  ENSSSCT00035074526.1 UniProtKB/TrEMBL
  ENSSSCT00040002959.1 UniProtKB/TrEMBL
  ENSSSCT00040002986.1 UniProtKB/TrEMBL
  ENSSSCT00040002995.1 UniProtKB/TrEMBL
  ENSSSCT00045060580.1 UniProtKB/TrEMBL
  ENSSSCT00045060655.1 UniProtKB/TrEMBL
  ENSSSCT00055053249.1 UniProtKB/TrEMBL
  ENSSSCT00055053331.1 UniProtKB/TrEMBL
  ENSSSCT00055053535.1 UniProtKB/TrEMBL
  ENSSSCT00060107105.1 UniProtKB/TrEMBL
  ENSSSCT00065064673.1 UniProtKB/TrEMBL
  ENSSSCT00065064684.1 UniProtKB/TrEMBL
  ENSSSCT00065064691.1 UniProtKB/TrEMBL
  ENSSSCT00065064695.1 UniProtKB/TrEMBL
  ENSSSCT00070032287.1 UniProtKB/TrEMBL
  ENSSSCT00070032297.1 UniProtKB/TrEMBL
  ENSSSCT00070032307.1 UniProtKB/TrEMBL
  ENSSSCT00070032309.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
InterPro Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_2 UniProtKB/TrEMBL
NCBI Gene RABEPK ENTREZGENE
PANTHER RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
Pfam Kelch_1 UniProtKB/TrEMBL
  Kelch_2 UniProtKB/TrEMBL
  Kelch_3 UniProtKB/TrEMBL
  Kelch_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
UniProt A0A287BR94 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UAS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UEW8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J7I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JAT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A8M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AH69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BH81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BKR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BVH0 ENTREZGENE, UniProtKB/TrEMBL
  F1SKQ3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92045 ENTREZGENE