ZNF81 (zinc finger protein 81) - Rat Genome Database

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Gene: ZNF81 (zinc finger protein 81) Sus scrofa
Analyze
Symbol: ZNF81
Name: zinc finger protein 81
RGD ID: 14128999
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 41-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,246,751 - 42,468,024 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,161,461 - 47,199,035 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF81
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,246,751 - 42,468,024 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,161,461 - 47,199,035 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF81
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,836,902 - 47,925,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,836,902 - 48,002,561 (+)EnsemblGRCh38hg38GRCh38
GRCh37X47,696,301 - 47,785,026 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,581,245 - 47,666,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X47,452,554 - 47,537,860NCBI
CeleraX51,891,597 - 51,976,926 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,408,032 - 45,493,828 (+)NCBIHuRef
CHM1_1X47,727,451 - 47,812,794 (+)NCBICHM1_1
T2T-CHM13v2.0X47,246,777 - 47,335,477 (+)NCBIT2T-CHM13v2.0
Znf81
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,581,501 - 3,679,905 (-)NCBIGRCr8
mRatBN7.2X1,030,103 - 1,126,078 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,036,153 - 1,126,102 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X1,034,455 - 1,112,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,031,035 - 1,076,850 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X1,029,815 - 1,107,306 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX1,604,860 - 1,678,759 (-)NCBICelera
Cytogenetic MapXq11NCBI
Znf81
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516219,262 - 248,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955516215,370 - 312,684 (-)NCBIChiLan1.0ChiLan1.0
ZNF81
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,449,491 - 49,554,373 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,452,860 - 49,557,736 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,258,879 - 40,355,254 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,153,161 - 48,248,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,153,161 - 48,239,640 (+)Ensemblpanpan1.1panPan2
ZNF81
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,353,241 - 41,460,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,353,440 - 41,593,082 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,809,514 - 15,839,547 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,569,129 - 41,599,151 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,492,365 - 41,599,148 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,556,187 - 41,586,205 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,544,528 - 41,574,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,637,711 - 41,667,767 (+)NCBIUU_Cfam_GSD_1.0
Znf81
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,627,866 - 33,695,612 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650213,497,078 - 13,526,328 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650213,468,969 - 13,526,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF81
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,001,296 - 45,089,891 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607610,265,564 - 10,358,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf81
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624978291,491 - 383,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624978291,506 - 393,153 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF81
2651 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 2
Low 10 4 2 4 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000013432   ⟹   ENSSSCP00000013072
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX42,277,027 - 42,363,689 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075038   ⟹   ENSSSCP00000067711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX42,285,188 - 42,366,643 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081636   ⟹   ENSSSCP00000073906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX42,277,008 - 42,468,024 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000101263   ⟹   ENSSSCP00000076687
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX42,246,751 - 42,363,698 (+)Ensembl
RefSeq Acc Id: XM_021080389   ⟹   XP_020936048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080390   ⟹   XP_020936049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080391   ⟹   XP_020936050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080392   ⟹   XP_020936051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080393   ⟹   XP_020936052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080394   ⟹   XP_020936053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080395   ⟹   XP_020936054
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X42,246,548 - 42,372,191 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020936049   ⟸   XM_021080390
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936048   ⟸   XM_021080389
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936053   ⟸   XM_021080394
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936052   ⟸   XM_021080393
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936050   ⟸   XM_021080391
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936051   ⟸   XM_021080392
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936054   ⟸   XM_021080395
- UniProtKB: A0A8W4FBP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067711   ⟸   ENSSSCT00000075038
RefSeq Acc Id: ENSSSCP00000013072   ⟸   ENSSSCT00000013432
RefSeq Acc Id: ENSSSCP00000073906   ⟸   ENSSSCT00000081636
RefSeq Acc Id: ENSSSCP00000076687   ⟸   ENSSSCT00000101263
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012283 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013432.4 UniProtKB/TrEMBL
  ENSSSCT00000075038.2 UniProtKB/TrEMBL
  ENSSSCT00000081636.1 UniProtKB/TrEMBL
  ENSSSCT00000101263 ENTREZGENE
  ENSSSCT00000101263.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF81 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 939 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A5G2R0I2_PIG UniProtKB/TrEMBL
  A0A5G2RA43_PIG UniProtKB/TrEMBL
  A0A8W4FBP5 ENTREZGENE, UniProtKB/TrEMBL
  F1RW60_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95308 ENTREZGENE