LOC100526148 (spindlin-2B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC100526148 (spindlin-2B) Sus scrofa
Analyze
Symbol: LOC100526148
Name: spindlin-2B
RGD ID: 14128637
Description: ENCODES a protein that exhibits methylated histone binding (inferred); INVOLVED IN gamete generation (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X49,492,205 - 49,507,749 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X55,642,791 - 55,644,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA)
nucleoplasm  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100526148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X49,492,205 - 49,507,749 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X55,642,791 - 55,644,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPIN2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X57,119,682 - 57,121,548 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX57,118,551 - 57,121,548 (-)EnsemblGRCh38hg38GRCh38
GRCh37X57,146,115 - 57,147,981 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X57,162,840 - 57,164,704 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX61,000,501 - 61,002,365 (-)NCBICelera
Cytogenetic MapXp11.21NCBI
HuRefX54,209,485 - 54,211,348 (-)NCBIHuRef
CHM1_1X57,136,254 - 57,138,118 (-)NCBICHM1_1
T2T-CHM13v2.0X56,418,555 - 56,420,421 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC100526148
9 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3
Low 8 2 3 4 20 1 3
Below cutoff 2 2 1 2 1 1

Sequence


RefSeq Acc Id: XM_003135134   ⟹   XP_003135182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X49,492,205 - 49,507,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673680   ⟹   XP_005673737
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X49,500,614 - 49,507,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673681   ⟹   XP_005673738
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X49,492,205 - 49,507,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079993   ⟹   XP_020935652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X49,492,205 - 49,507,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079994   ⟹   XP_020935653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X49,492,205 - 49,507,091 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003135182   ⟸   XM_003135134
- UniProtKB: A0A286ZXD6 (UniProtKB/TrEMBL),   A0A4X1VL59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935652   ⟸   XM_021079993
- UniProtKB: A0A286ZXD6 (UniProtKB/TrEMBL),   A0A4X1VL59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673738   ⟸   XM_005673681
- UniProtKB: A0A286ZXD6 (UniProtKB/TrEMBL),   A0A4X1VL59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935653   ⟸   XM_021079994
- UniProtKB: A0A286ZXD6 (UniProtKB/TrEMBL),   A0A4X1VL59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673737   ⟸   XM_005673680
- UniProtKB: A0A286ZXD6 (UniProtKB/TrEMBL),   A0A4X1VL59 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035557 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000052851 UniProtKB/TrEMBL
  ENSSSCG00015034337 UniProtKB/TrEMBL
  ENSSSCG00025075675 UniProtKB/TrEMBL
  ENSSSCG00025075706 UniProtKB/TrEMBL
  ENSSSCG00025075782 UniProtKB/TrEMBL
  ENSSSCG00030049504 UniProtKB/TrEMBL
  ENSSSCG00030059496 UniProtKB/TrEMBL
  ENSSSCG00030059528 UniProtKB/TrEMBL
  ENSSSCG00035078434 UniProtKB/TrEMBL
  ENSSSCG00040044164 UniProtKB/TrEMBL
  ENSSSCG00040044214 UniProtKB/TrEMBL
  ENSSSCG00045014324 UniProtKB/TrEMBL
  ENSSSCG00045034613 UniProtKB/TrEMBL
  ENSSSCG00045034639 UniProtKB/TrEMBL
  ENSSSCG00050048202 UniProtKB/TrEMBL
  ENSSSCG00050059424 UniProtKB/TrEMBL
  ENSSSCG00050059527 UniProtKB/TrEMBL
  ENSSSCG00055005168 UniProtKB/TrEMBL
  ENSSSCG00055020629 UniProtKB/TrEMBL
  ENSSSCG00060004247 UniProtKB/TrEMBL
  ENSSSCG00060009351 UniProtKB/TrEMBL
  ENSSSCG00065023214 UniProtKB/TrEMBL
  ENSSSCG00065046872 UniProtKB/TrEMBL
  ENSSSCG00065046967 UniProtKB/TrEMBL
  ENSSSCG00070024704 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037487 ENTREZGENE
  ENSSSCT00000037487.2 UniProtKB/TrEMBL
  ENSSSCT00000094279.1 UniProtKB/TrEMBL
  ENSSSCT00015045602.1 UniProtKB/TrEMBL
  ENSSSCT00025104454.1 UniProtKB/TrEMBL
  ENSSSCT00025104499.1 UniProtKB/TrEMBL
  ENSSSCT00025104623.1 UniProtKB/TrEMBL
  ENSSSCT00030069020.1 UniProtKB/TrEMBL
  ENSSSCT00030083055.1 UniProtKB/TrEMBL
  ENSSSCT00030083104.1 UniProtKB/TrEMBL
  ENSSSCT00035106995.1 UniProtKB/TrEMBL
  ENSSSCT00040059193.1 UniProtKB/TrEMBL
  ENSSSCT00040059270.1 UniProtKB/TrEMBL
  ENSSSCT00045024403.1 UniProtKB/TrEMBL
  ENSSSCT00045059279.1 UniProtKB/TrEMBL
  ENSSSCT00045059328.1 UniProtKB/TrEMBL
  ENSSSCT00050065668.1 UniProtKB/TrEMBL
  ENSSSCT00050080937.1 UniProtKB/TrEMBL
  ENSSSCT00050081088.1 UniProtKB/TrEMBL
  ENSSSCT00055010114.1 UniProtKB/TrEMBL
  ENSSSCT00055040426.1 UniProtKB/TrEMBL
  ENSSSCT00060005257.1 UniProtKB/TrEMBL
  ENSSSCT00060012051.1 UniProtKB/TrEMBL
  ENSSSCT00065030900.1 UniProtKB/TrEMBL
  ENSSSCT00065064113.1 UniProtKB/TrEMBL
  ENSSSCT00065064228.1 UniProtKB/TrEMBL
  ENSSSCT00070049324.1 UniProtKB/TrEMBL
  ENSSSCT00070049332.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.70 UniProtKB/TrEMBL
InterPro SPIN/Ssty UniProtKB/TrEMBL
  SPIN/Ssty_sf UniProtKB/TrEMBL
KEGG Report ssc:100525267 UniProtKB/TrEMBL
  ssc:100526148 UniProtKB/TrEMBL
NCBI Gene LOC100526148 ENTREZGENE
PANTHER PTHR10405 UniProtKB/TrEMBL
  PTHR10405:SF13 UniProtKB/TrEMBL
Pfam Spin-Ssty UniProtKB/TrEMBL
UniProt A0A286ZXD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VL59 ENTREZGENE, UniProtKB/TrEMBL