RNGTT (RNA guanylyltransferase and 5'-phosphatase) - Rat Genome Database
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Gene: RNGTT (RNA guanylyltransferase and 5'-phosphatase) Sus scrofa
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Symbol: RNGTT
Name: RNA guanylyltransferase and 5'-phosphatase
RGD ID: 14127901
Description: ENCODES a protein that exhibits RNA guanylyltransferase activity (ortholog); INVOLVED IN RNA processing (ortholog); PARTICIPATES IN 5'-end pre-mRNA capping pathway; RNA polymerase II transcription elongation pathway; FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: mRNA-capping enzyme
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl156,852,863 - 57,061,972 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1156,852,864 - 57,061,985 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2163,571,851 - 63,750,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RNGTT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl156,852,863 - 57,061,972 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1156,852,864 - 57,061,985 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2163,571,851 - 63,750,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNGTT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl688,609,897 - 88,963,618 (-)EnsemblGRCh38hg38GRCh38
GRCh38688,609,897 - 88,963,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37689,319,988 - 89,673,440 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36689,376,708 - 89,730,067 (-)NCBINCBI36hg18NCBI36
Build 34689,376,717 - 89,730,023NCBI
Celera689,737,906 - 90,091,236 (-)NCBI
Cytogenetic Map6q15NCBI
HuRef686,535,387 - 86,889,057 (-)NCBIHuRef
CHM1_1689,417,380 - 89,771,218 (-)NCBICHM1_1
Rngtt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39433,310,300 - 33,502,614 (+)NCBIGRCm39mm39
GRCm38433,310,300 - 33,502,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl433,310,311 - 33,502,614 (+)EnsemblGRCm38mm10GRCm38
MGSCv37433,397,286 - 33,589,585 (+)NCBIGRCm37mm9NCBIm37
MGSCv36433,639,043 - 33,831,223 (+)NCBImm8
Celera433,062,022 - 33,255,229 (+)NCBICelera
Cytogenetic Map4A5NCBI
Rngtt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0548,561,325 - 48,779,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl548,561,339 - 48,779,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0553,143,335 - 53,362,344 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4549,605,150 - 49,811,502 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1549,605,435 - 49,809,750 (+)NCBI
Celera546,464,963 - 46,671,822 (+)NCBICelera
Cytogenetic Map5q21NCBI
Rngtt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541115,486,303 - 15,766,864 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541115,486,532 - 15,766,880 (-)NCBIChiLan1.0ChiLan1.0
RNGTT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1689,761,712 - 90,118,184 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl689,761,712 - 90,118,184 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0686,490,725 - 86,841,421 (-)NCBIMhudiblu_PPA_v0panPan3
RNGTT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1247,946,561 - 48,275,969 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11247,944,600 - 48,306,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rngtt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365103,186,552 - 3,405,862 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNGTT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11313,053,741 - 13,386,479 (-)NCBI
ChlSab1.1 Ensembl1313,053,405 - 13,386,481 (-)Ensembl
Rngtt
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247995,225,293 - 5,553,957 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 2 3 5 8 1 3 3
Low 3 2 2 15 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004766   ⟹   ENSSSCP00000004655
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl156,852,863 - 57,061,972 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053939   ⟹   ENSSSCP00000044017
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl156,852,873 - 57,061,955 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058496   ⟹   ENSSSCP00000043271
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl156,852,863 - 57,061,972 (-)Ensembl
RefSeq Acc Id: XM_021089928   ⟹   XP_020945587
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1156,852,864 - 57,061,985 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089934   ⟹   XP_020945593
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1156,852,866 - 57,061,972 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945587 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945593 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020945587   ⟸   XM_021089928
- Sequence:
RefSeq Acc Id: XP_020945593   ⟸   XM_021089934
- Sequence:
RefSeq Acc Id: ENSSSCP00000043271   ⟸   ENSSSCT00000058496
RefSeq Acc Id: ENSSSCP00000004655   ⟸   ENSSSCT00000004766
RefSeq Acc Id: ENSSSCP00000044017   ⟸   ENSSSCT00000053939
Protein Domains
TYR_PHOSPHATASE_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024688 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004655 UniProtKB/TrEMBL
  ENSSSCP00000043271 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044017 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070041643 UniProtKB/TrEMBL
  ENSSSCP00070041644 UniProtKB/TrEMBL
  ENSSSCP00070041645 UniProtKB/TrEMBL
  ENSSSCP00070041647 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004766 UniProtKB/TrEMBL
  ENSSSCT00000053939 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000058496 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070049295 UniProtKB/TrEMBL
  ENSSSCT00070049296 UniProtKB/TrEMBL
  ENSSSCT00070049298 UniProtKB/TrEMBL
  ENSSSCT00070049299 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  mRNA_cap_enz_bifunc UniProtKB/TrEMBL
  mRNA_cap_enzyme UniProtKB/TrEMBL
  mRNA_cap_enzyme_C UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
NCBI Gene RNGTT ENTREZGENE
Pfam DSPc UniProtKB/TrEMBL
  mRNA_cap_C UniProtKB/TrEMBL
  mRNA_cap_enzyme UniProtKB/TrEMBL
PIRSF mRNA_capping_HCE UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A287AGV9_PIG UniProtKB/TrEMBL
  A0A287AJ32_PIG UniProtKB/TrEMBL
  A0A4X1VEE3_PIG UniProtKB/TrEMBL
  A0A4X1VIK7_PIG UniProtKB/TrEMBL
  A0A4X1VJM1_PIG UniProtKB/TrEMBL
  F1S0E4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92400 ENTREZGENE