PCNA (proliferating cell nuclear antigen) - Rat Genome Database

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Gene: PCNA (proliferating cell nuclear antigen) Sus scrofa
Analyze
Symbol: PCNA
Name: proliferating cell nuclear antigen
RGD ID: 14127840
Description: ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); dinucleotide insertion or deletion binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to UV (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Ataxia Telangiectasia Like Disorder (ortholog); Ataxia-Telangiectasia-Like Disorder 2 (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog); INTERACTS WITH bifenthrin; bis(2-chloroethyl) sulfide; deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,136,886 - 14,142,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,137,746 - 14,142,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,127,978 - 15,132,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17785595   PMID:19309504  


Genomics

Comparative Map Data
PCNA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,136,886 - 14,142,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,137,746 - 14,142,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,127,978 - 15,132,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCNA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,114,953 - 5,126,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl205,114,953 - 5,126,626 (-)EnsemblGRCh38hg38GRCh38
GRCh37205,095,599 - 5,107,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,043,599 - 5,055,268 (-)NCBINCBI36Build 36hg18NCBI36
Build 34205,043,598 - 5,048,647NCBI
Celera205,165,620 - 5,177,289 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,049,534 - 5,061,197 (-)NCBIHuRef
CHM1_1205,096,983 - 5,108,646 (-)NCBICHM1_1
T2T-CHM13v2.0205,154,376 - 5,166,040 (-)NCBIT2T-CHM13v2.0
Pcna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,091,206 - 132,095,100 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,091,082 - 132,095,234 (-)EnsemblGRCm39 Ensembl
GRCm382132,249,286 - 132,253,180 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,249,162 - 132,253,314 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,075,022 - 132,078,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,940,727 - 131,944,621 (-)NCBIMGSCv36mm8
Celera2133,472,471 - 133,476,365 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
Pcna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23119,499,039 - 119,502,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,498,810 - 119,502,995 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,402,795 - 123,406,667 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03131,989,995 - 131,993,868 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03129,658,899 - 129,662,771 (-)NCBIRnor_WKY
Rnor_6.03124,880,698 - 124,884,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,880,698 - 124,884,570 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,376,235 - 131,380,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,008,715 - 120,012,589 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,914,289 - 119,918,243 (-)NCBI
Celera3118,296,567 - 118,300,439 (-)NCBICelera
RH 3.4 Map31023.4RGD
Cytogenetic Map3q36NCBI
Pcna
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,744,601 - 15,749,673 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,744,601 - 15,748,910 (-)NCBIChiLan1.0ChiLan1.0
PCNA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1206,059,299 - 6,070,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,134,930 - 5,146,603 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,927,731 - 4,939,440 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,927,731 - 4,939,440 (-)Ensemblpanpan1.1panPan2
PCNA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,478,774 - 16,485,992 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,478,769 - 16,484,992 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,301,671 - 16,308,866 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,892,157 - 16,899,336 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,892,161 - 16,899,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,489,199 - 16,496,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,596,221 - 16,603,283 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,929,896 - 16,937,077 (+)NCBIUU_Cfam_GSD_1.0
Pcna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,334,861 - 165,339,851 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648513,766,221 - 13,771,215 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCNA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,936,600 - 32,953,635 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,948,196 - 32,953,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,581,432 - 11,598,250 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcna
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,143,332 - 6,148,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,143,584 - 6,148,055 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 1 5 2 2 3
Low 2 1 18 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000060066   ⟹   ENSSSCP00000041307
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1714,125,814 - 14,185,276 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000100030   ⟹   ENSSSCP00000080593
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1714,136,886 - 14,142,744 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000106258   ⟹   ENSSSCP00000079679
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1714,136,888 - 14,142,732 (-)Ensembl
RefSeq Acc Id: NM_001291925   ⟹   NP_001278854
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11714,137,746 - 14,142,584 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001278854 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABF13285 (Get FASTA)   NCBI Sequence Viewer  
  AHW83661 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001278854   ⟸   NM_001291925
- UniProtKB: A0A287ABG2 (UniProtKB/TrEMBL),   A0A4X1UCE6 (UniProtKB/TrEMBL),   X5FB24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041307   ⟸   ENSSSCT00000060066
RefSeq Acc Id: ENSSSCP00000079679   ⟸   ENSSSCT00000106258
RefSeq Acc Id: ENSSSCP00000080593   ⟸   ENSSSCT00000100030

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030642 Ensembl
  ENSSSCG00000056538 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028743 UniProtKB/TrEMBL
  ENSSSCG00015007221 UniProtKB/TrEMBL
  ENSSSCG00025038387 UniProtKB/TrEMBL
  ENSSSCG00040018171 UniProtKB/TrEMBL
  ENSSSCG00050055108 UniProtKB/TrEMBL
  ENSSSCG00060059012 UniProtKB/TrEMBL
  ENSSSCG00070016771 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000079679 ENTREZGENE
  ENSSSCP00000079679.1 UniProtKB/TrEMBL
  ENSSSCP00000080593.1 UniProtKB/TrEMBL
  ENSSSCP00005028071.1 UniProtKB/TrEMBL
  ENSSSCP00005028082.1 UniProtKB/TrEMBL
  ENSSSCP00015003846.1 UniProtKB/TrEMBL
  ENSSSCP00025022278.1 UniProtKB/TrEMBL
  ENSSSCP00040010418.1 UniProtKB/TrEMBL
  ENSSSCP00050032432.1 UniProtKB/TrEMBL
  ENSSSCP00060034845.1 UniProtKB/TrEMBL
  ENSSSCP00070027599.1 UniProtKB/TrEMBL
  ENSSSCP00070027606.1 UniProtKB/TrEMBL
  ENSSSCP00070027626.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000100030.1 UniProtKB/TrEMBL
  ENSSSCT00000106258 ENTREZGENE
  ENSSSCT00000106258.1 UniProtKB/TrEMBL
  ENSSSCT00005045741.1 UniProtKB/TrEMBL
  ENSSSCT00005045757.1 UniProtKB/TrEMBL
  ENSSSCT00015009653.1 UniProtKB/TrEMBL
  ENSSSCT00025052231.1 UniProtKB/TrEMBL
  ENSSSCT00040024559.1 UniProtKB/TrEMBL
  ENSSSCT00050075188.1 UniProtKB/TrEMBL
  ENSSSCT00060080525.1 UniProtKB/TrEMBL
  ENSSSCT00070033046.1 UniProtKB/TrEMBL
  ENSSSCT00070033054.1 UniProtKB/TrEMBL
  ENSSSCT00070033075.1 UniProtKB/TrEMBL
Gene3D-CATH 3.70.10.10 UniProtKB/TrEMBL
  DNA Polymerase III, subunit A, domain 2 UniProtKB/TrEMBL
InterPro DNA_clamp_sf UniProtKB/TrEMBL
  Pr_cel_nuc_antig UniProtKB/TrEMBL
  Pr_cel_nuc_antig_C UniProtKB/TrEMBL
  Pr_cel_nuc_antig_CS UniProtKB/TrEMBL
  Pr_cel_nuc_antig_N UniProtKB/TrEMBL
KEGG Report ssc:692192 UniProtKB/TrEMBL
NCBI Gene PCNA ENTREZGENE
PANTHER PROLIFERATING CELL NUCLEAR ANTIGEN UniProtKB/TrEMBL
  PROLIFERATING CELL NUCLEAR ANTIGEN UniProtKB/TrEMBL
Pfam PCNA_C UniProtKB/TrEMBL
  PCNA_N UniProtKB/TrEMBL
PRINTS PCNACYCLIN UniProtKB/TrEMBL
PROSITE PCNA_1 UniProtKB/TrEMBL
  PCNA_2 UniProtKB/TrEMBL
Superfamily-SCOP DNA clamp UniProtKB/TrEMBL
TIGRFAMs pcna UniProtKB/TrEMBL
UniProt A0A287ABG2 ENTREZGENE
  A0A4X1UCE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UCG8_PIG UniProtKB/TrEMBL
  A0A4X1UET8_PIG UniProtKB/TrEMBL
  A0A8W4FK22_PIG UniProtKB/TrEMBL
  A0A8W4FQE3_PIG UniProtKB/TrEMBL
  X5FB24 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:104017 ENTREZGENE