SLC25A22 (solute carrier family 25 member 22) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: SLC25A22 (solute carrier family 25 member 22) Sus scrofa
Analyze
Symbol: SLC25A22
Name: solute carrier family 25 member 22
RGD ID: 14127749
Description: INVOLVED IN L-aspartate transmembrane transport (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 3 (ortholog); FOUND IN integral component of membrane (inferred); mitochondrial inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: mitochondrial glutamate carrier 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2491,299 - 498,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12491,288 - 498,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22175,568 - 183,079 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC25A22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2491,299 - 498,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12491,288 - 498,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22175,568 - 183,079 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11790,475 - 798,281 (-)EnsemblGRCh38hg38GRCh38
GRCh3811790,475 - 798,281 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711790,475 - 798,281 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611780,475 - 786,221 (-)NCBINCBI36hg18NCBI36
Build 3411780,475 - 786,221NCBI
Celera11857,022 - 864,848 (-)NCBI
Cytogenetic Map11p15.5NCBI
HuRef11607,241 - 615,035 (-)NCBIHuRef
CHM1_111789,304 - 797,176 (-)NCBICHM1_1
Slc25a22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,009,662 - 141,017,787 (-)NCBIGRCm39mm39
GRCm39 Ensembl7141,009,657 - 141,017,805 (-)Ensembl
GRCm387141,429,749 - 141,437,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,429,744 - 141,437,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv377148,615,648 - 148,623,773 (-)NCBIGRCm37mm9NCBIm37
MGSCv367141,281,072 - 141,288,938 (-)NCBImm8
Celera7141,223,495 - 141,231,620 (-)NCBICelera
Cytogenetic Map7F5NCBI
Slc25a22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21196,528,471 - 196,536,398 (-)NCBI
Rnor_6.0 Ensembl1214,410,417 - 214,414,897 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01214,410,388 - 214,418,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01220,890,711 - 220,898,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,617,689 - 201,625,537 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11201,771,046 - 201,778,892 (-)NCBI
Celera1194,161,971 - 194,169,815 (-)NCBICelera
Cytogenetic Map1q41NCBI
Slc25a22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,334,507 - 11,338,835 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,334,508 - 11,338,781 (+)NCBIChiLan1.0ChiLan1.0
SLC25A22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111851,998 - 859,866 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11851,998 - 858,121 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011807,886 - 815,770 (-)NCBIMhudiblu_PPA_v0panPan3
SLC25A22
(Canis lupus familiaris - dog)
No map positions available.
Slc25a22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936888558,064 - 565,576 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A22
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11593,914 - 601,603 (-)NCBI
ChlSab1.1 Ensembl1593,890 - 598,585 (-)Ensembl
Slc25a22
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476621,710,867 - 21,717,724 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 17
Low 10 3 3 5 1 6 2 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014039   ⟹   ENSSSCP00000013654
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2491,299 - 498,769 (-)Ensembl
RefSeq Acc Id: XM_003122398   ⟹   XP_003122446
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12491,288 - 498,773 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652778   ⟹   XP_005652835
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12491,288 - 498,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652779   ⟹   XP_005652836
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12491,288 - 498,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652780   ⟹   XP_005652837
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12491,288 - 498,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652781   ⟹   XP_005652838
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12491,288 - 498,590 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003122446   ⟸   XM_003122398
- UniProtKB: F1RYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652836   ⟸   XM_005652779
- UniProtKB: F1RYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652838   ⟸   XM_005652781
- UniProtKB: F1RYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652837   ⟸   XM_005652780
- UniProtKB: F1RYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652835   ⟸   XM_005652778
- UniProtKB: F1RYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000013654   ⟸   ENSSSCT00000014039


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070027476 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013654 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070046762 UniProtKB/TrEMBL
  ENSSSCP00070046764 UniProtKB/TrEMBL
  ENSSSCP00070046767 UniProtKB/TrEMBL
  ENSSSCP00070046787 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014039 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070055108 UniProtKB/TrEMBL
  ENSSSCT00070055110 UniProtKB/TrEMBL
  ENSSSCT00070055113 UniProtKB/TrEMBL
  ENSSSCT00070055135 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100514030 UniProtKB/TrEMBL
NCBI Gene SLC25A22 ENTREZGENE
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A4X1VXK5_PIG UniProtKB/TrEMBL
  F1RYY8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92999 ENTREZGENE