IMPG2 (interphotoreceptor matrix proteoglycan 2) - Rat Genome Database

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Gene: IMPG2 (interphotoreceptor matrix proteoglycan 2) Sus scrofa
Analyze
Symbol: IMPG2
Name: interphotoreceptor matrix proteoglycan 2
RGD ID: 14127121
Description: ENCODES a protein that exhibits heparin binding (inferred); hyaluronic acid binding (inferred); INVOLVED IN extracellular matrix organization (ortholog); protein localization (ortholog); retina morphogenesis in camera-type eye (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); Eye Abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN cell periphery (inferred); cell projection (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,675,265 - 157,759,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,672,973 - 157,763,817 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213167,156,425 - 167,213,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IMPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,675,265 - 157,759,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,672,973 - 157,763,817 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213167,156,425 - 167,213,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IMPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,222,546 - 101,320,575 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3101,222,546 - 101,320,575 (-)EnsemblGRCh38hg38GRCh38
GRCh373100,941,390 - 101,039,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,427,978 - 102,522,109 (-)NCBINCBI36Build 36hg18NCBI36
Build 343102,427,977 - 102,522,109NCBI
Celera399,336,927 - 99,431,029 (-)NCBICelera
Cytogenetic Map3q12.3NCBI
HuRef398,310,078 - 98,408,005 (-)NCBIHuRef
CHM1_13100,904,435 - 101,002,378 (-)NCBICHM1_1
T2T-CHM13v2.03103,928,482 - 104,026,449 (-)NCBIT2T-CHM13v2.0
Impg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391656,019,447 - 56,094,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1656,024,676 - 56,094,119 (+)EnsemblGRCm39 Ensembl
GRCm381656,203,839 - 56,273,753 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1656,204,313 - 56,273,756 (+)EnsemblGRCm38mm10GRCm38
MGSCv371656,204,426 - 56,273,866 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361656,129,264 - 56,198,704 (+)NCBIMGSCv36mm8
Celera1656,513,770 - 56,586,681 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.91NCBI
Impg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,787,914 - 57,887,450 (-)NCBIGRCr8
mRatBN7.21144,318,836 - 44,418,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,318,836 - 44,418,382 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1153,102,588 - 53,195,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01145,764,196 - 45,857,013 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01144,888,351 - 44,981,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01146,615,091 - 46,693,565 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,615,200 - 46,693,565 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,797,496 - 49,875,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,267,158 - 45,385,026 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,324,746 - 45,442,615 (-)NCBI
Celera1144,082,608 - 44,170,046 (-)NCBICelera
Cytogenetic Map11q12NCBI
Impg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554272,826,457 - 2,919,282 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554272,825,940 - 2,919,282 (-)NCBIChiLan1.0ChiLan1.0
IMPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2299,175,172 - 99,265,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1399,179,956 - 99,270,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0398,325,379 - 98,418,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13105,005,029 - 105,098,122 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,005,553 - 105,097,902 (-)Ensemblpanpan1.1panPan2
IMPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,706,069 - 7,785,817 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,709,683 - 7,785,309 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,857,507 - 7,940,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0337,842,019 - 7,924,899 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl337,848,570 - 7,924,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,730,507 - 7,813,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,776,490 - 7,858,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,116,576 - 8,198,496 (-)NCBIUU_Cfam_GSD_1.0
Impg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602149,085,104 - 149,174,028 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366301,982,783 - 2,071,953 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366301,982,860 - 2,069,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IMPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,560,987 - 79,664,906 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,561,498 - 79,660,472 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604186,901,526 - 86,998,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Impg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,060,525 - 15,175,617 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,056,692 - 15,184,385 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IMPG2
2073 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000041751   ⟹   ENSSSCP00000032326
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13157,675,265 - 157,759,266 (+)Ensembl
RefSeq Acc Id: XM_021070502   ⟹   XP_020926161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113157,681,567 - 157,763,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070503   ⟹   XP_020926162
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113157,701,305 - 157,763,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070504   ⟹   XP_020926163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113157,681,567 - 157,758,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070505   ⟹   XP_020926164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113157,672,973 - 157,763,817 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020926164   ⟸   XM_021070505
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UW16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926161   ⟸   XM_021070502
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UW16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926163   ⟸   XM_021070504
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UW16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926162   ⟸   XM_021070503
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZZ45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032326   ⟸   ENSSSCT00000041751
Protein Domains
SEA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031273 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035047898 UniProtKB/TrEMBL
  ENSSSCG00070020223 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041751 ENTREZGENE
  ENSSSCT00000041751.3 UniProtKB/TrEMBL
  ENSSSCT00035063886.1 UniProtKB/TrEMBL
  ENSSSCT00070040112.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.960 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  IMPG UniProtKB/TrEMBL
  SEA_dom UniProtKB/TrEMBL
  SEA_dom_sf UniProtKB/TrEMBL
NCBI Gene IMPG2 ENTREZGENE
PANTHER PTHR12199 UniProtKB/TrEMBL
  PTHR12199:SF4 UniProtKB/TrEMBL
Pfam SEA UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
SMART SEA UniProtKB/TrEMBL
Superfamily-SCOP SSF82671 UniProtKB/TrEMBL
UniProt A0A286ZLK9_PIG UniProtKB/TrEMBL
  A0A4X1UW16 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZZ45 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98048 ENTREZGENE