MIR708 (microRNA mir-708) - Rat Genome Database

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Gene: MIR708 (microRNA mir-708) Sus scrofa
Analyze
Symbol: MIR708 (Ensembl: ssc-mir-708)
Name: microRNA mir-708 (Ensembl:ssc-mir-708)
RGD ID: 14126696
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 708; ssc-mir-708
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl913,780,171 - 13,780,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1913,780,171 - 13,780,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2915,120,477 - 15,120,556 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:19917043   PMID:20433717   PMID:21312241  


Genomics

Comparative Map Data
MIR708
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl913,780,171 - 13,780,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1913,780,171 - 13,780,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2915,120,477 - 15,120,556 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIR708
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,402,022 - 79,402,109 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,402,022 - 79,402,109 (-)EnsemblGRCh38hg38GRCh38
GRCh371179,113,066 - 79,113,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,790,713 - 78,790,800 (-)NCBINCBI36Build 36hg18NCBI36
Celera1176,422,187 - 76,422,274 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1175,409,416 - 75,409,503 (-)NCBIHuRef
CHM1_11178,995,903 - 78,995,990 (-)NCBICHM1_1
T2T-CHM13v2.01179,336,291 - 79,336,378 (-)NCBIT2T-CHM13v2.0
Mir708
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39795,898,631 - 95,898,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl795,898,631 - 95,898,739 (+)EnsemblGRCm39 Ensembl
GRCm38796,249,424 - 96,249,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,249,424 - 96,249,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv377103,397,934 - 103,398,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7E1NCBI
cM Map752.54NCBI
Mir708
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81160,011,158 - 160,011,245 (+)NCBIGRCr8
mRatBN7.21150,599,876 - 150,599,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,599,876 - 150,599,963 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1158,583,701 - 158,583,788 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,763,871 - 165,763,958 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,637,325 - 158,637,412 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,221,246 - 161,221,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,221,246 - 161,221,333 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,436,243 - 167,436,330 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1148,707,350 - 148,707,437 (+)NCBICelera
Cytogenetic Map1q32NCBI
MIR708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12119,542,577 - 19,542,645 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2119,542,577 - 19,542,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2119,437,542 - 19,437,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02119,738,865 - 19,738,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2119,738,865 - 19,738,933 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12119,524,078 - 19,524,146 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02119,737,931 - 19,737,999 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02119,661,690 - 19,661,758 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in MIR708
1 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system reproductive system
High
Medium 3 3
Low 2 1 10 1
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000020794
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl913,780,171 - 13,780,250 (-)Ensembl
RefSeq Acc Id: NR_038566
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1913,780,171 - 13,780,250 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000019199 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020794 ENTREZGENE
miRBase MI0013154 ENTREZGENE
NCBI Gene MIR708 ENTREZGENE
RNAcentral URS000019D79B RNACentral
  URS000075C5E4 RNACentral
  URS000075D08B RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR708  microRNA mir-708    microRNA 708  Symbol and/or name change 5135510 APPROVED