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Gene: RTP5 (receptor transporter protein 5 (putative)) Sus scrofa

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Symbol:

RTP5

Name:

receptor transporter protein 5 (putative)

RGD ID:

14126686

Description:

ASSOCIATED WITH chromosome 2q37 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

receptor-transporting protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	140,355,264 - 140,358,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 2q37 deletion syndrome (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of bitter taste (IBA)

protein insertion into membrane (IBA)

protein targeting to membrane (IBA)

Cellular Component

membrane (IEA)

Molecular Function

olfactory receptor binding (IBA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RTP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	140,355,264 - 140,358,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RTP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	241,869,729 - 241,873,823 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	241,869,600 - 241,873,823 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	242,811,881 - 242,815,975 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	242,460,559 - 242,464,155 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	236,471,678 - 236,475,274 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	234,556,570 - 234,560,166 (+)	NCBI		HuRef
CHM1_1	2	242,816,987 - 242,820,583 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	242,371,330 - 242,375,424 (+)	NCBI		T2T-CHM13v2.0

Rtp5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955542	40,344 - 43,885 (-)	NCBI	ChiLan1.0	ChiLan1.0

RTP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	144,558,958 - 144,566,408 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	144,573,855 - 144,582,030 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	130,870,027 - 130,871,938 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RTP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	51,625,156 - 51,628,670 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	51,846,749 - 51,850,246 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	51,826,432 - 51,829,930 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	25	51,676,295 - 51,679,791 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	51,415,524 - 51,419,019 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	51,692,733 - 51,696,231 (+)	NCBI		UU_Cfam_GSD_1.0

Rtp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	193,072,716 - 193,135,989 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936745	143,541 - 146,508 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	127,896,387 - 127,900,889 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	127,896,981 - 127,900,516 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	71,419,721 - 71,424,749 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rtp5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624847	5,746,275 - 5,751,088 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RTP5
33 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	nervous system	reproductive system
22	3	22	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021074744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021074744 ⟹ XP_020930403

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	140,355,264 - 140,358,828 (+)	NCBI

Sequence:

show sequence

TTTCTAATTTCTCCTAAAGTGAAAACCCACTGCTTGCGTAATAAAAAAGTATTCAAAAGGATCA
GAAAGAAAGGCCTATTTCTCACATCTCTGAGACAAGCCTGGTTGCCATGGAGATTGGACGGTTG
TCAAGGCAGCGATTGGCTGGGCAGCCACCGGGTGGGTACTTGCTAGGAGCCGGGAGCTGGCGCA
GCTGTCAGACCGCACTGCAGAGGCCAGTGCCAGCATGGACGGGGTGGACGTGTGGGCCAACACC
TTGGCCCAGCTGATGGCCAAGAGGAAACCCCAGGACACCTGGGAGCTGGTCCCCGAGGAGAACC
TGGCCTCTGGCCACCTGGACAGCAGAGGGTTCCAGTACCGGCTGAGGGGGCTTGCGAGGCTGCA
GTGTGGCCGCTGCCAGTGGGGCTGGTCCTCGGCCCACGTGCACGTCCTCTTCCACCTGTGGTGG
GATGCAGACCGCCGGTTGGGGCTGGTGAAGATGCGCCTCTGGGGCCAGCGGTGCCGGCTGTGCC
CGCCCGGCCGCGCGGCGTCTGCCAGGAGCCTCCTGAACGTGCGGCTCTTCCTGGGGAAGCTGGT
GCAGTTCATCGTGCAGAAGTGCTACGGGGAGGACCTCAGCCCAGACCAGTGCCCCGAGATCTGC
TTCGGCGAGCGCTGCGAGGCCTGCGACCTGGGCGTCTGCTTCTTCCAGAAGCCTCTGGACCCCG
CCTGGGGGCCTGAGATCCCCAGCACCCTGAGAGGTGGCAGCAGTGGTGGCGGTGGTGGCGGCGG
GAGTGGCGCGGCCGCCTCCAGCAGACAGGCGCTGACCCTGGTGGTGGACCGCTCGGGGGGCTGC
ACCCCCAGCTCCTACCTCATCCCTCTGTCCATGGCCGACTTCGTCAAGGACCTCCTCCTAGAGA
GCAGGAACCTCTTTAGCGAGGATGAGGACATTGTCACCATCCCCTTCTCCCTCGCGCGCAAGAA
GAAGGGCTCGCTGCCCAAGGCCGACCCTGGCAGCGTCGCCCGGGGCACCATCTACCTGCCTGGA
AGCTCCAAGGGCAGAAGCCTTGCGGTGGACCTCAGGGCGCCTGCCTTCCCCACCAAAGGCCTGC
AGCTCAGCAGCATCAAGGCCATCACAGGCTTCATCTGCAAGGGCCGGGGCTGCGTCTGCGACCC
TGAGCAGGTTCCCAGCCAGGGCCTGGTCACGGACGGGAACAGTCCGCGGCCTATGACCTACATC
ATTGGTCTCACGCACGCTGGGGAGGGCTGCATCACCTTCCCCACAGCGCTGGCCGATGCGGTCC
TGGAGAGCGCGGACCCCCCCGGCAGCATGGATGGCTGGCTCACCTTTCCCTTCTTCTTTGCAGA
CAGGAGCAGGGCCCCCACTCCCGGTGCCGCCCGAGGCAACAGGCTGGAGGGCAGCGGTGGTCCT
GCCCCCGCGGGCCCTGGCCCCCTTCCAGGGACCACAGCCGGCCGCCTCGTCCCCATCAGCAACG
GCTCCATCACCATCCCCTTCTCCATCCTCGGCCTCATTCAGTGCAAGGGCTCCTGCGACAAGGC
CAGCGGTCCCCAAAGCAGCGACCCGAAGCCGGGGCAGCCGTGGTTCTGGGCCAGCAGGTCTGGG
TTCCCCAGTGAGGAGGACTTTGGGGAGGAGGGCTGCGGCGTGCCCCTCTTCGACCCCTATGAAG
AGGTCTGGATCTTGGTCTCCGTGGCCGTCTTTATCCTCTGGATAATGTACTTGTACAAGTTCAG
CCCCGACCACGCCCCACGGATGTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020930403	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000048953.2
	ENSSSCP00015043657.1
	ENSSSCP00025035120.1
	ENSSSCP00045020757.1
	ENSSSCP00055034731.1
	ENSSSCP00065004769.1

RefSeq Acc Id:

XP_020930403 ⟸ XM_021074744

- UniProtKB:

A0A8D0Q732 (UniProtKB/TrEMBL), A0A8D0UWP5 (UniProtKB/TrEMBL), A0A8D1HN12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDGVDVWANTLAQLMAKRKPQDTWELVPEENLASGHLDSRGFQYRLRGLARLQCGRCQWGWSSA
HVHVLFHLWWDADRRLGLVKMRLWGQRCRLCPPGRAASARSLLNVRLFLGKLVQFIVQKCYGED
LSPDQCPEICFGERCEACDLGVCFFQKPLDPAWGPEIPSTLRGGSSGGGGGGGSGAAASSRQAL
TLVVDRSGGCTPSSYLIPLSMADFVKDLLLESRNLFSEDEDIVTIPFSLARKKKGSLPKADPGS
VARGTIYLPGSSKGRSLAVDLRAPAFPTKGLQLSSIKAITGFICKGRGCVCDPEQVPSQGLVTD
GNSPRPMTYIIGLTHAGEGCITFPTALADAVLESADPPGSMDGWLTFPFFFADRSRAPTPGAAR
GNRLEGSGGPAPAGPGPLPGTTAGRLVPISNGSITIPFSILGLIQCKGSCDKASGPQSSDPKPG
QPWFWASRSGFPSEEDFGEEGCGVPLFDPYEEVWILVSVAVFILWIMYLYKFSPDHAPRM

hide sequence

Protein Domains

3CxxC-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000032511	UniProtKB/TrEMBL
	ENSSSCG00015077342	UniProtKB/TrEMBL
	ENSSSCG00025059014	UniProtKB/TrEMBL
	ENSSSCG00045017586	UniProtKB/TrEMBL
	ENSSSCG00055022239	UniProtKB/TrEMBL
	ENSSSCG00065008665	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000061349.2	UniProtKB/TrEMBL
	ENSSSCT00015104450.1	UniProtKB/TrEMBL
	ENSSSCT00025080781.1	UniProtKB/TrEMBL
	ENSSSCT00045029949.1	UniProtKB/TrEMBL
	ENSSSCT00055043627.1	UniProtKB/TrEMBL
	ENSSSCT00065011586.1	UniProtKB/TrEMBL
InterPro	R-trans_p	UniProtKB/TrEMBL
	ZAR1/RTP1-5-like_Znf-3CxxC	UniProtKB/TrEMBL
NCBI Gene	RTP5	ENTREZGENE
PANTHER	RECEPTOR TRANSPORTING PROTEIN	UniProtKB/TrEMBL
	RECEPTOR-TRANSPORTING PROTEIN 5	UniProtKB/TrEMBL
Pfam	zf-3CxxC	UniProtKB/TrEMBL
SMART	zf-3CxxC	UniProtKB/TrEMBL
UniProt	A0A287AXU4_PIG	UniProtKB/TrEMBL
	A0A8D0Q732	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UWP5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1HN12	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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