CCDC86 (coiled-coil domain containing 86) - Rat Genome Database

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Gene: CCDC86 (coiled-coil domain containing 86) Sus scrofa
Analyze
Symbol: CCDC86
Name: coiled-coil domain containing 86
RGD ID: 14126609
Description: ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN chromosome (inferred); nucleolus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 86
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,895,652 - 10,906,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,895,649 - 10,906,196 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,478,275 - 10,489,172 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
CCDC86
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,895,652 - 10,906,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,895,649 - 10,906,196 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,478,275 - 10,489,172 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC86
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,842,113 - 60,851,081 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,842,113 - 60,851,081 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,609,586 - 60,618,554 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,366,005 - 60,375,137 (+)NCBINCBI36Build 36hg18NCBI36
Celera1157,970,276 - 57,979,408 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,955,550 - 56,964,682 (+)NCBIHuRef
CHM1_11160,475,753 - 60,484,884 (+)NCBICHM1_1
T2T-CHM13v2.01160,792,420 - 60,802,200 (+)NCBIT2T-CHM13v2.0
Ccdc86
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,918,845 - 10,926,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,918,845 - 10,926,630 (-)EnsemblGRCm39 Ensembl
GRCm381910,941,481 - 10,949,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,941,481 - 10,949,266 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,015,971 - 11,023,756 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,009,776 - 11,016,311 (-)NCBIMGSCv36mm8
Celera1911,634,390 - 11,642,176 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.41NCBI
Ccdc86
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,015,059 - 217,021,439 (-)NCBIGRCr8
mRatBN7.21207,590,167 - 207,596,547 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,590,168 - 207,596,544 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,965,783 - 215,971,364 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,026,491 - 223,032,073 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,720,182 - 215,725,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,996,435 - 227,002,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,996,237 - 227,002,139 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,062,123 - 234,067,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,440,231 - 213,445,812 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,598,291 - 213,604,260 (-)NCBI
Celera1205,082,932 - 205,088,513 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ccdc86
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555115,533,895 - 5,535,984 (+)NCBIChiLan1.0ChiLan1.0
CCDC86
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,011,171 - 62,020,397 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,055,201 - 63,064,426 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,105,239 - 56,114,322 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,546,050 - 59,555,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,546,050 - 59,555,028 (+)Ensemblpanpan1.1panPan2
CCDC86
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,431,768 - 55,437,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,432,310 - 55,438,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1854,004,746 - 54,010,545 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,479,957 - 56,485,757 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11855,537,443 - 55,543,215 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01855,158,980 - 55,164,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,040,162 - 56,045,962 (-)NCBIUU_Cfam_GSD_1.0
Ccdc86
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,958,785 - 11,964,860 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,072,886 - 2,078,605 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,072,607 - 2,078,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC86
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,994,892 - 13,004,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,992,953 - 13,004,029 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,361,651 - 110,370,734 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc86
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926259,372 - 263,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926259,458 - 263,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC86
355 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000071179   ⟹   ENSSSCP00000069643
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl210,895,652 - 10,906,119 (-)Ensembl
RefSeq Acc Id: XM_003122668   ⟹   XP_003122716
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1210,895,649 - 10,906,196 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003122716   ⟸   XM_003122668
- UniProtKB: A0A0B8S0A9 (UniProtKB/TrEMBL),   A0A4X1VLW1 (UniProtKB/TrEMBL),   A0A5G2RF85 (UniProtKB/TrEMBL),   A0A8D2BS12 (UniProtKB/TrEMBL),   A0A8D0Y9K4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000069643   ⟸   ENSSSCT00000071179


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015038002 UniProtKB/TrEMBL
  ENSSSCG00025043962 UniProtKB/TrEMBL
  ENSSSCG00030074224 UniProtKB/TrEMBL
  ENSSSCG00035065670 UniProtKB/TrEMBL
  ENSSSCG00040039885 UniProtKB/TrEMBL
  ENSSSCG00045028141 UniProtKB/TrEMBL
  ENSSSCG00050048470 UniProtKB/TrEMBL
  ENSSSCG00055012854 UniProtKB/TrEMBL
  ENSSSCG00060068036 UniProtKB/TrEMBL
  ENSSSCG00065019443 UniProtKB/TrEMBL
  ENSSSCG00070025445 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000071179 ENTREZGENE
  ENSSSCT00000071179.2 UniProtKB/TrEMBL
  ENSSSCT00015050553.1 UniProtKB/TrEMBL
  ENSSSCT00025059647.1 UniProtKB/TrEMBL
  ENSSSCT00025059736.1 UniProtKB/TrEMBL
  ENSSSCT00030104086.1 UniProtKB/TrEMBL
  ENSSSCT00035088467.1 UniProtKB/TrEMBL
  ENSSSCT00040053341.1 UniProtKB/TrEMBL
  ENSSSCT00040053384.1 UniProtKB/TrEMBL
  ENSSSCT00045047926.1 UniProtKB/TrEMBL
  ENSSSCT00045047977.1 UniProtKB/TrEMBL
  ENSSSCT00050066021.1 UniProtKB/TrEMBL
  ENSSSCT00055025299.1 UniProtKB/TrEMBL
  ENSSSCT00055025330.1 UniProtKB/TrEMBL
  ENSSSCT00060092851.1 UniProtKB/TrEMBL
  ENSSSCT00065025887.1 UniProtKB/TrEMBL
  ENSSSCT00070050865.1 UniProtKB/TrEMBL
InterPro CCDC86 UniProtKB/TrEMBL
  Cgr1-like UniProtKB/TrEMBL
KEGG Report ssc:100526154 UniProtKB/TrEMBL
NCBI Gene CCDC86 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 86 UniProtKB/TrEMBL
  PTHR13557 UniProtKB/TrEMBL
Pfam Cgr1 UniProtKB/TrEMBL
UniProt A0A0B8S0A9 ENTREZGENE
  A0A4X1VLW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RF85 ENTREZGENE
  A0A8D0Y9K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EH24_PIG UniProtKB/TrEMBL
  A0A8D1IQC3_PIG UniProtKB/TrEMBL
  A0A8D1QDH5_PIG UniProtKB/TrEMBL
  A0A8D2BS12 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2RF85 UniProtKB/TrEMBL
VGNC ID VGNC:86323 ENTREZGENE