RARS1 (arginyl-tRNA synthetase 1)

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Gene: RARS1 (arginyl-tRNA synthetase 1) Sus scrofa

Analyze

Symbol:

RARS1

Name:

arginyl-tRNA synthetase 1

RGD ID:

14126074

Description:

ENCODES a protein that exhibits arginine binding (ortholog); arginine-tRNA ligase activity (ortholog); ATP binding (ortholog); INVOLVED IN arginyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH hypomyelinating leukodystrophy 9 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

arginine--tRNA ligase, cytoplasmic; arginyl-tRNA synthetase; ARGRS; RARS

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RARS1 (arginyl-tRNA synthetase 1)	HGNC	EggNOG, Ensembl, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rars (arginyl-tRNA synthetase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rars1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rars1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RARS1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RARS1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rars1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RARS1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rars1 (arginyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	55,373,726 - 55,412,117 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	55,373,739 - 55,412,076 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	59,959,187 - 59,972,120 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypomyelinating leukodystrophy 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

arginyl-tRNA aminoacylation (IBA,IEA,ISO)

Cellular Component

aminoacyl-tRNA synthetase multienzyme complex (IEA,ISO)

cytoplasm (IEA)

cytosol (IEA)

nucleoplasm (IEA)

nucleus (ISO)

Molecular Function

arginine binding (ISO)

arginine-tRNA ligase activity (IBA,IEA,ISO)

ATP binding (IEA,ISO)

protein binding (ISO)

tRNA binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

RARS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	55,373,726 - 55,412,117 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	55,373,739 - 55,412,076 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	59,959,187 - 59,972,120 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RARS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	168,486,451 - 168,519,301 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	168,486,471 - 168,519,301 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	167,913,476 - 167,946,306 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	5	167,913,463 - 167,946,311 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	167,846,041 - 167,878,889 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	167,846,040 - 167,878,885	NCBI
Celera	5	163,948,808 - 163,981,683 (+)	NCBI
Cytogenetic Map	5	q34	NCBI
HuRef	5	163,012,238 - 163,045,058 (+)	NCBI		HuRef
CHM1_1	5	167,346,530 - 167,379,378 (+)	NCBI		CHM1_1

Rars
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	35,699,207 - 35,725,355 (-)	NCBI	GRCm39		mm39
GRCm38	11	35,808,381 - 35,834,528 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	35,808,381 - 35,834,506 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	35,621,883 - 35,648,030 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	35,651,806 - 35,677,929 (-)	NCBI			mm8
Celera	11	39,591,462 - 39,617,635 (-)	NCBI		Celera
Cytogenetic Map	11	A4	NCBI

Rars1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	20,270,744 - 20,295,192 (-)	NCBI
Rnor_6.0 Ensembl	10	20,633,632 - 20,658,100 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	20,633,630 - 20,658,074 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	20,505,807 - 20,530,334 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	20,721,170 - 20,745,484 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	20,722,223 - 20,746,536 (-)	NCBI
Celera	10	19,889,464 - 19,913,910 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

Rars1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	21,536,426 - 21,574,683 (+)	NCBI	ChiLan1.0	ChiLan1.0

RARS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	170,616,819 - 170,649,655 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	170,616,819 - 170,649,655 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	163,851,644 - 163,884,787 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RARS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	4	43,237,499 - 43,260,677 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	4	43,237,499 - 43,260,738 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936622	884,324 - 917,964 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RARS1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	70,711,435 - 70,746,000 (+)	NCBI
ChlSab1.1 Ensembl	23	70,711,016 - 70,745,884 (+)	Ensembl

Rars1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	21,487,847 - 21,535,487 (-)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	2	3	5	2	17	1	3	3
Low		2				6	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY550055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU640466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU694725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01112452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000018527 ⟹ ENSSSCP00000018027

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	55,373,726 - 55,412,117 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000068343 ⟹ ENSSSCP00000072735

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	55,373,726 - 55,411,473 (-)	Ensembl

RefSeq Acc Id:

NM_001244260 ⟹ NP_001231189

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	55,373,739 - 55,412,076 (-)	NCBI

Sequence:

show sequence

AGGACGCTGGCGAGAGGATGGACGGCTTAGTCGCTGCCTGCTCCGCGCGGCTGCTGCAGCAGGA
GAAAGAGATTAAGTTTCTGACTGCTGAAATTGATCGGTTGAAAAATTGTAGCTGTTCAGAAGCT
TCTTCAAATTTGGAGCGATTGCGGGAGGAAAATTTAAAATTAAAGTATCGGCTGAATATCCTTC
AAAAAAGTCTTCAAGCAGAAAGGAACAAACCAAGTAAAAATATGATTAACATCATTAGTGGCCT
ACAAGAGGTCTTTGGTTGTGCCATTAAAGCTGCGTATCCAGATTTGGAAAACCCTCCGCTGATA
GTGACACCAAGTCAACAGCCCAAGTTCGGGGACTATCAGTGTAACAGTGCTATGGGCATTTCTC
AGATGCTCAAAACAAAGGAACAGAAAGTTAACCCAAGAGAAATTGCTGAAAACATTACCAAAAA
TCTTCCAGACAATGAATATATTGAAAAAGTTGAAATTGCTGGTCCCGGTTTCATTAATATTCAC
TTAAAGAAAAGCTTTGTATCACAACAGCTGACCAATCTCTTGGTGAATGGTGTTCAACTACCTG
CCATCGGAGCAAACAAAAAGGTTATAGTAGACTTTTCCTCTCCCAACATAGCTAAAGAGATGCA
CGTAGGCCATCTCAGGTCAACGATCATAGGAGAGAGCATGAGCCGCCTCTTTGAGTTTGCAGGA
TATGACGTGCTGCGGATAAACCATGTAGGAGATTGGGGGACCCAGTTTGGCATGCTCATTGCTC
ACCTGCAAGATAAGTTTCCGGATTACCTGAGAGTCTCACCTCCTATTGGGGATCTCCAGGCTTT
TTATAAGGAATCCAAGAAGAGATTTGATACTGAGGAGGAATTTAAGAAGCGAGCGTATCAATGT
GTAGTATTGCTCCAGAGTAAAAATCCAGACATCTTAAAAGCTTGGAAGCTTATCTGTGATGTCT
CCCGCCAAGAGTTCAGTAAAATCTATGAGGCATTGGACATCTCTTTAATAGAGAGAGGGGAATC
CTTCTATCAAGATAGAATGAATGATATTGTAAAGGAATTTGAAGATAGAGGATTTGTACAAGTG
GATGATGGCAGAAAGATTGTGTTTGTTCCAGGATGTCCTGTACCATTAACCATAGTAAAATCAG
ATGGAGGGTATACCTATGATACATCTGACCTGGCTACTATAAAGCAAAGACTGTTTGAGGAAAA
AGCAGATATGATCATCTATGTGGTAGACAGTGGACAATCTTTGCACTTCCAGGCAGTATTTGGT
GCTGCTCAAATGATGGGTTGGTATGACCCTGAAGTAACTCGAGTGTCTCATGCTGGATTTGGTG
TGGTGCTGGGGGAAGACAAGAAGAAGTTTAAAACACGATCAGGTGAAACAGTACGCCTCATAGA
CCTTCTGGAAGAAGGACTAAAACGCTCCATGGACAAATTGAAGGAAAAGGAAAGAGACAAGGTC
TTAACCGCAGAGGAATTGAAGGCTGCTCAGACGTCTGTTGCTTACGGCTGTATCAAATATGCTG
ATCTTTCCCATAACCGCCTGAATGACTATATCTTCTCCTTTGACAAAATGCTGGATGATAGAGG
AAATACAGCTGCTTACTTGTTGTATGCCTTCACTAGAATCAGATCTATTGCCCGTCTCGCCAAT
ATTGATGAAGAGATGCTCCAGAAAGCTGCTCGAGAGACCAAGATCATTTTGGACCATGAGAAGG
AATGGAAACTAGGCCGGTGCATCTTACGGTTCCCTGAGGTTCTGCAGAAGATTTTAGATGACTT
ATTTCTGCACACTCTCTGTGATTATATCTATGAGCTGGCAACTACTTTCACAGAATTCTACGAT
AGCTGCTATTGTGTGGAAAAAGATCGACAGACTGGAGAAGTACTGAAGGTGAACATGTGGCGTT
TGCTGCTGTGCAAAGCAGTAGCTGCTGTCATGGCCAAGGGGTTTGATATCCTGGGAATAAAGCC
TGTCCAAAGAATGTAATCCTCCTTAGGTTCAAACACTGTGTGTTTTTACCAAAGTGGCCATTGG
CATTGTTTGCTTTTTTACAATCATGTGGATATAAAAACAAGTAAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231189	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS55913	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001231189 ⟸ NM_001244260

- UniProtKB:

F1RR89 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSNLERLREENLKLKYRLNILQKSLQA
ERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKTK
EQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLVNGVQLPAIGANK
KVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQDKF
PDYLRVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQSKNPDILKAWKLICDVSRQEFS
KIYEALDISLIERGESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCPVPLTIVKSDGGYTY
DTSDLATIKQRLFEEKADMIIYVVDSGQSLHFQAVFGAAQMMGWYDPEVTRVSHAGFGVVLGED
KKKFKTRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNR
LNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKIILDHEKEWKLGR
CILRFPEVLQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGEVLKVNMWRLLLCKA
VAAVMAKGFDILGIKPVQRM

hide sequence

RefSeq Acc Id:

ENSSSCP00000072735 ⟸ ENSSSCT00000068343

RefSeq Acc Id:

ENSSSCP00000018027 ⟸ ENSSSCT00000018527

Protein Domains

Arg_tRNA_synt_N DALR_1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017015	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000018027	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00000072735	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018527	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00000068343	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1360.70	UniProtKB/TrEMBL
	3.40.50.620	UniProtKB/TrEMBL
InterPro	aa-tRNA-synth_I_CS	UniProtKB/TrEMBL
	Arg-tRNA-ligase	UniProtKB/TrEMBL
	Arg-tRNA-synth_N	UniProtKB/TrEMBL
	Arg-tRNA-synth_N_sf	UniProtKB/TrEMBL
	ArgRS_core	UniProtKB/TrEMBL
	DALR_anticod-bd	UniProtKB/TrEMBL
	Rossmann-like_a/b/a_fold	UniProtKB/TrEMBL
	tRNAsynth_Ia_anticodon-bd	UniProtKB/TrEMBL
KEGG Report	ssc:414410	UniProtKB/TrEMBL
NCBI Gene	RARS	ENTREZGENE
PANTHER	PTHR11956	UniProtKB/TrEMBL
Pfam	Arg_tRNA_synt_N	UniProtKB/TrEMBL
	DALR_1	UniProtKB/TrEMBL
	tRNA-synt_1d	UniProtKB/TrEMBL
PRINTS	TRNASYNTHARG	UniProtKB/TrEMBL
PROSITE	AA_TRNA_LIGASE_I	UniProtKB/TrEMBL
SMART	Arg_tRNA_synt_N	UniProtKB/TrEMBL
	DALR_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47323	UniProtKB/TrEMBL
	SSF55190	UniProtKB/TrEMBL
TIGRFAMs	argS	UniProtKB/TrEMBL
UniProt	A0A5G2RDY5_PIG	UniProtKB/TrEMBL
	F1RR89	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:92099	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-07-23	RARS1	arginyl-tRNA synthetase 1	RARS	arginyl-tRNA synthetase	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - OMIM