LOC100739219 (olfactory receptor 10J4) - Rat Genome Database

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Gene: LOC100739219 (olfactory receptor 10J4) Sus scrofa
Analyze
Symbol: LOC100739219 (Ensembl: OR10J4)
Name: olfactory receptor 10J4 (Ensembl:olfactory receptor family 10 subfamily J member 4 (gene/pseudogene))
RGD ID: 14125686
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,024,840 - 91,025,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,024,002 - 91,032,134 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,113,179 - 99,117,401 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100739219
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,024,840 - 91,025,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,024,002 - 91,032,134 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,113,179 - 99,117,401 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR10J4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,432,204 - 159,433,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,432,204 - 159,433,138 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,401,994 - 159,402,928 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,668,518 - 157,669,649 (+)NCBINCBI36Build 36hg18NCBI36
Celera1132,472,235 - 132,473,167 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1130,759,007 - 130,759,939 (+)NCBIHuRef
CHM1_11160,797,387 - 160,798,319 (+)NCBICHM1_1
T2T-CHM13v2.01158,569,240 - 158,570,175 (+)NCBIT2T-CHM13v2.0
LOC100974674
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,417,888 - 90,418,962 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,155,148 - 90,156,540 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,787,035 - 134,788,427 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11138,584,608 - 138,585,627 (+)NCBIpanpan1.1PanPan1.1panPan2
OR10J4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,590,598 - 22,593,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,590,692 - 22,591,627 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,667,250 - 22,668,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,713,473 - 22,716,129 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,713,579 - 22,714,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,479,652 - 22,480,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,012,090 - 23,013,025 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,423,699 - 23,424,634 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100739219
172 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system hemolymphoid system
High
Medium
Low
Below cutoff 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021089592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000030893   ⟹   ENSSSCP00000064234
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl491,024,840 - 91,025,775 (-)Ensembl
RefSeq Acc Id: XM_021089592   ⟹   XP_020945251
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1491,024,002 - 91,032,134 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945251 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000064234
  ENSSSCP00000064234.1
  ENSSSCP00060046899.1
  ENSSSCP00070045893.1
RefSeq Acc Id: XP_020945251   ⟸   XM_021089592
- UniProtKB: A0A4X1VV41 (UniProtKB/TrEMBL),   A0A5G2QQ91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000064234   ⟸   ENSSSCT00000030893

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029064 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00060077257 UniProtKB/TrEMBL
  ENSSSCG00070026998 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030893 ENTREZGENE
  ENSSSCT00000030893.3 UniProtKB/TrEMBL
  ENSSSCT00060106284.1 UniProtKB/TrEMBL
  ENSSSCT00070054133.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100739219 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 10J6-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1VV41 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QQ91 ENTREZGENE, UniProtKB/TrEMBL