EHBP1L1 (EH domain binding protein 1 like 1) - Rat Genome Database

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Gene: EHBP1L1 (EH domain binding protein 1 like 1) Sus scrofa
Analyze
Symbol: EHBP1L1
Name: EH domain binding protein 1 like 1
RGD ID: 14123316
Description: INVOLVED IN actin cytoskeleton organization (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); FOUND IN filamentous actin (inferred); microtubule organizing center (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EH domain-binding protein 1-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,662,463 - 6,678,888 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,662,460 - 6,678,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,865,120 - 5,881,490 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EHBP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,662,463 - 6,678,888 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,662,460 - 6,678,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,865,120 - 5,881,490 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EHBP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,576,053 - 65,592,650 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,576,046 - 65,592,650 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,343,524 - 65,360,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,100,085 - 65,116,692 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,670,174 - 62,686,826 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,670,490 - 61,687,082 (+)NCBIHuRef
CHM1_11165,227,406 - 65,244,013 (+)NCBICHM1_1
T2T-CHM13v2.01165,570,286 - 65,586,883 (+)NCBIT2T-CHM13v2.0
Ehbp1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,757,397 - 5,776,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,757,404 - 5,776,345 (-)EnsemblGRCm39 Ensembl
GRCm38195,707,369 - 5,726,576 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,707,376 - 5,726,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,707,369 - 5,726,317 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,708,049 - 5,726,270 (-)NCBIMGSCv36mm8
Celera195,577,419 - 5,596,367 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Ehbp1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,423,444 - 212,444,357 (-)NCBIGRCr8
mRatBN7.21202,994,115 - 203,014,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,994,118 - 203,014,270 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,346,682 - 211,366,954 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,439,512 - 218,459,668 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,130,558 - 211,150,712 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,061,878 - 221,084,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,062,147 - 221,084,129 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,997,200 - 228,017,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,331,747 - 208,353,714 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,529,858 - 200,549,849 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ehbp1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542219,670,778 - 19,689,008 (-)NCBIChiLan1.0ChiLan1.0
EHBP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,805,762 - 66,822,356 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,848,529 - 67,865,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,935,156 - 60,951,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,272,237 - 64,286,297 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,273,027 - 64,285,950 (+)Ensemblpanpan1.1panPan2
EHBP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,613,465 - 51,630,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,614,425 - 51,630,315 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,220,843 - 50,238,929 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,649,609 - 52,667,675 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,651,576 - 52,667,446 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,749,501 - 51,767,582 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,323,541 - 51,341,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,113,942 - 52,131,994 (-)NCBIUU_Cfam_GSD_1.0
Ehbp1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,867,005 - 3,882,732 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,867,185 - 3,882,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHBP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,648,318 - 8,664,990 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,648,641 - 8,664,759 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,943,058 - 105,959,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehbp1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,800,254 - 20,821,165 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EHBP1L1
492 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 5 2 1 3
Low 2 3 23 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021082835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU914305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01014873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000014198   ⟹   ENSSSCP00000013812
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,669,282 - 6,678,689 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074897   ⟹   ENSSSCP00000064359
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,662,463 - 6,678,888 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000093714   ⟹   ENSSSCP00000079290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,662,463 - 6,678,689 (-)Ensembl
RefSeq Acc Id: XM_021082835   ⟹   XP_020938494
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082836   ⟹   XP_020938495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082837   ⟹   XP_020938496
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082838   ⟹   XP_020938497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,667,621 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082839   ⟹   XP_020938498
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082840   ⟹   XP_020938499
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082841   ⟹   XP_020938500
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082842   ⟹   XP_020938501
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082843   ⟹   XP_020938502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082844   ⟹   XP_020938503
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082845   ⟹   XP_020938504
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082846   ⟹   XP_020938505
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082847   ⟹   XP_020938506
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,662,460 - 6,678,721 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020938506   ⟸   XM_021082847
- Peptide Label: isoform X13
- UniProtKB: A0A4X1UNI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938504   ⟸   XM_021082845
- Peptide Label: isoform X11
- UniProtKB: A0A4X1UNI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938500   ⟸   XM_021082841
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020938495   ⟸   XM_021082836
- Peptide Label: isoform X2
- UniProtKB: A0A5G2QHU5 (UniProtKB/TrEMBL),   A0A480HZX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938505   ⟸   XM_021082846
- Peptide Label: isoform X12
- UniProtKB: A0A4X1UNI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938503   ⟸   XM_021082844
- Peptide Label: isoform X10
- UniProtKB: A0A4X1UNI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938502   ⟸   XM_021082843
- Peptide Label: isoform X9
- UniProtKB: A0A4X1UNI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938501   ⟸   XM_021082842
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020938499   ⟸   XM_021082840
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020938498   ⟸   XM_021082839
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020938496   ⟸   XM_021082837
- Peptide Label: isoform X3
- UniProtKB: A0A480HZX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938494   ⟸   XM_021082835
- Peptide Label: isoform X1
- UniProtKB: A0A480HZX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938497   ⟸   XM_021082838
- Peptide Label: isoform X4
- UniProtKB: A0A8D1YNW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000064359   ⟸   ENSSSCT00000074897
RefSeq Acc Id: ENSSSCP00000013812   ⟸   ENSSSCT00000014198
RefSeq Acc Id: ENSSSCP00000079290   ⟸   ENSSSCT00000093714
Protein Domains
bMERB   C2 NT-type   Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012988 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00065038500 UniProtKB/TrEMBL
  ENSSSCG00070019079 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014198 ENTREZGENE
  ENSSSCT00000014198.5 UniProtKB/TrEMBL
  ENSSSCT00000074897 ENTREZGENE
  ENSSSCT00000074897.2 UniProtKB/TrEMBL
  ENSSSCT00000093714.1 UniProtKB/TrEMBL
  ENSSSCT00065052654.1 UniProtKB/TrEMBL
  ENSSSCT00070037778.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro bMERB_dom UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
NCBI Gene EHBP1L1 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/TrEMBL
  PTHR23167:SF42 UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE BMERB UniProtKB/TrEMBL
  C2_NT UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART DUF3585 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
UniProt A0A480HZX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UNI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QHU5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YNW0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FJ84_PIG UniProtKB/TrEMBL
  F1RRI6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87594 ENTREZGENE