KLHDC8B (kelch domain containing 8B)

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Gene: KLHDC8B (kelch domain containing 8B) Sus scrofa

Analyze

Symbol:

KLHDC8B

Name:

kelch domain containing 8B

RGD ID:

14122971

Description:

INVOLVED IN DNA recombination (inferred); meiotic DNA double-strand break formation (inferred); mitotic cytokinetic process (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); Hodgkin's lymphoma (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

kelch domain-containing protein 8B

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,775,694 - 31,780,484 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,775,339 - 31,780,483 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,005,885 - 35,011,029 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy type 2P (ISO)

Hodgkin's lymphoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA recombination (IEA)

meiotic DNA double-strand break formation (IEA)

mitotic cytokinetic process (IEA)

mitotic nuclear division (IEA)

nuclear chromosome segregation (IEA)

Cellular Component

cellularization cleavage furrow (IEA)

cytoplasm (ISO)

cytosol (IEA)

intercellular bridge (IEA)

midbody (IEA)

References

Genomics

Comparative Map Data

KLHDC8B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,775,694 - 31,780,484 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,775,339 - 31,780,483 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,005,885 - 35,011,029 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KLHDC8B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	49,171,598 - 49,176,486 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	49,171,120 - 49,176,487 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	49,209,031 - 49,213,919 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,184,072 - 49,188,923 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	3	49,166,287 - 49,171,188 (+)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,266,977 - 49,271,878 (+)	NCBI		HuRef
CHM1_1	3	49,161,789 - 49,166,690 (+)	NCBI		CHM1_1

Klhdc8b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,324,834 - 108,338,780 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	108,324,835 - 108,338,780 (-)	Ensembl
GRCm38	9	108,447,635 - 108,461,581 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,447,636 - 108,461,581 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,349,970 - 108,363,912 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	108,305,742 - 108,319,684 (-)	NCBI			mm8
Celera	9	108,056,827 - 108,070,762 (-)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

Klhdc8b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	109,141,594 - 109,146,584 (-)	NCBI
Rnor_6.0 Ensembl	8	117,231,769 - 117,237,229 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	117,232,047 - 117,236,792 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	116,576,621 - 116,581,366 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	108,442,391 - 108,447,071 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Klhdc8b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,158,162 - 1,163,305 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,158,888 - 1,162,710 (+)	NCBI	ChiLan1.0	ChiLan1.0

KLHDC8B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,173,894 - 50,179,759 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,174,393 - 50,179,759 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,094,203 - 49,099,818 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

KLHDC8B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	40,023,411 - 40,026,552 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	40,012,797 - 40,027,888 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Klhdc8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936529	863,052 - 872,067 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KLHDC8B
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,573,720 - 10,578,629 (+)	NCBI
ChlSab1.1 Ensembl	22	10,574,769 - 10,578,674 (+)	Ensembl

Klhdc8b
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,182,881 - 3,187,714 (+)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2		2			2
Low	8	4	1	5	2	21	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003132206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005669537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013981665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013981666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU856115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01106085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000055837 ⟹ ENSSSCP00000042031

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	31,775,694 - 31,780,484 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000063236 ⟹ ENSSSCP00000045493

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	31,775,718 - 31,780,481 (+)	Ensembl

RefSeq Acc Id:

XM_003132206 ⟹ XP_003132254

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	31,775,601 - 31,780,483 (+)	NCBI

Sequence:

show sequence

ATGGGTTGAGGGGGGCAGGTTTTCTCGAGTCGGGAGGGGGGACGAGAGGCGGACCCCATCCAGC
CCCGCCCCGCGCCGGAGCAGAGCAGGAGCAGAGCCCGAGCCCCGCCGGAGCCCGGCCTCAGCCC
CAGCCAGAGCCCGCACCAGCGTAGCCGGAACCGCGGACCCTGCGCCCCGGCGGCGCCGGAGCCC
CGGCCGGTGAAAGTCCTTGAACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATATGGG
GCCCCATCATGCCCCTCAGTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGGGGT
GAACACCATGGCTACAGGAGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCCACC
TGCCGGGTATATGGTACAGTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTGGCC
GGACTGGACTGCCTCTGGACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGCACT
GGCGCCCCTGCCCACTGCTCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCTAGTG
GTGGGTGGAGTGGATGAGGCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGCTGATGAGG
GCCGCTGGGAGCGTCGGGCCACCCTCCCTCAGGCAGCCATGGGGGTTGCGACTATGGAAAGAGA
TGGTATGGTGTATGCACTGGGGGGAATGGGCCCTGACACGGCCCCCCAGGCCCAGGTTCGGGTG
TATGAACCCCGCCGGGACTGCTGGCTTTCGCTGCCCTCGATGCCCACACCCTGCTATGGGGCTT
CTACCTTCCTACATGGGAACAAGATCTATGTCCTGGGGGGCCGCCAGGGCAAGCTCCCAGTGAC
TGCTTTTGAGGCCTTTGATTTGGAGACTCGTACCTGGACCCGACACCCAAGCCTGCCCAGCCGC
CGGGCCTTTGCTGGCTGCGCCATGGCCGAAGGCAGCATCTTTAGCCTCGGTGGTCTGCAGCAAC
CCGGGCCCCACAATTTCTACTCCCGACCACACTTTGTCAACACTGTGGAGATGTTCGACCTGGA
GCATGGGTCCTGGACCAAGCTGCCCCGCAGCCTGCGCATGAGGGCTAAGAGGGCCGACTTTGTG
GTTGGAGCCCTTGGGGACCACATCGTGGCCATTGGGGGCCTTGGAAACCAGCCATGCCCTCTGG
GCTCAGTAGAAGGCTTCAGCCTTGCACGGCGGCGTTGGGAAGCACTGCCTGCCATGCCCACGGC
CCGCTGCTCTTGCTCTAGTCTGCAGGCTGGACCCTGGCTGTTTGCTATTGGGGGTGTGGCCCAG
GGTCCCAGTCAAGCTGTGGAGGCACTGTGTCTGCGGGATGGGGTCTGAATGTTGATGGGACCTG
TTCACTGATGCAGCTCAGTGACAGAAGCAGACATCTGTGGTTCTTCTGCTGCTGAGGAAGCTCA
CTGTGGCTCTGTGGGATGAGGTGGGGCACTTGAGACATTGTCTTGGGGACTTGAGGGTTGCCTT
CATCTTTAGTGCAGGACACATATACGCTTACACCCTTTACTCCCGTTCATTCATGGACCATGCC
CAGCTCCACCCTTGCTCTGGAACCTACTGGGCCAGAAGTGGGAGAGGGCAGAGCTGGCCTCATG
CTCCACAAGGTCAGTGCCTACCTGGAGTATATCAGGCCCACCCCAATGGCTGTTCCTGAAAAAT
CCTGTCAGCCTGCCTTGAAGGCCCCTTTGGACCCAGGAGAGTTCAGAGAGGGTGGGTACACAGA
GGGGTGGGGGAGTGGATGCAAGGACCTTCAGAGTGCTAGAAGAATGATGGCTTGGGCCCTATAC
ACTGCTGGCTGTGTGACCTTGGGCAAGTCATTTCACCTCTCTGTGCCTCAGCATCCACATCTGT
AAATGGGGATCTCTGAAACCTTCCTACCCTACCTACCTCACAGGGCTGTTGTGAGGATCCAGGA
AGTTCAGATGTGGAAGTAAAAGTGCTGCTAAATCTG

hide sequence

RefSeq Acc Id:

XM_005669537 ⟹ XP_005669594

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	31,775,817 - 31,780,483 (+)	NCBI

Sequence:

show sequence

GCGCTCAGGGGAAGTTTGGGGCGCGGGGTGTGGAGCCCCAAACGCGCTCGCCCGGACCCGGCCT
CCGCCCCTTTCGCGTGCTGGAAGTTTGCGGCCCGGAGGGCCTCGCGCCCTGGGGTCCCAGGAGC
GTGGCCCTCGCGGGAATGGATAAGCTGGGGAACTTCGACATCTGCTGTGAAGTCCAGCTGCCCA
TTTCTGGTGGAAACACCCTGGACTCTGGGAACCTGGAGTCCAGTACTCATGGGATCCCAAAATC
AATCCCCCCCTCCCCCCTGCCTTCTGTACCCGGAGAAGGCTGGCCCCTGGGGACCTGGCTTAGA
CAAACCCCTGAGGGTAGACCTCGAGGGGAAATGTGGGACTCTGGCCTCCAGCCCAACCCCTCCC
AGTCCCAAACACCCTTTTTCTGGTAGGAATGGATAAACTCTATTGTACCCTCCACCCCCCTGGC
TTCCAAAGGGTTTGTAAGGATACCCTGGAGTCTGATCTCTGGCAGCAGATGGGAGACCCTAATG
GCTGCCCAGAGCACACTGGAAGCCAGTAAGGGGGAAGGTACAGTACAACTCCACTGATGCAGAG
CACCAAGGTGAAAGTCCTTGAACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATATGG
GGCCCCATCATGCCCCTCAGTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGGGG
TGAACACCATGGCTACAGGAGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCCAC
CTGCCGGGTATATGGTACAGTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTGGC
CGGACTGGACTGCCTCTGGACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGCAC
TGGCGCCCCTGCCCACTGCTCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCTAGT
GGTGGGTGGAGTGGATGAGGCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGCTGATGAG
GGCCGCTGGGAGCGTCGGGCCACCCTCCCTCAGGCAGCCATGGGGGTTGCGACTATGGAAAGAG
ATGGTATGGTGTATGCACTGGGGGGAATGGGCCCTGACACGGCCCCCCAGGCCCAGGTTCGGGT
GTATGAACCCCGCCGGGACTGCTGGCTTTCGCTGCCCTCGATGCCCACACCCTGCTATGGGGCT
TCTACCTTCCTACATGGGAACAAGATCTATGTCCTGGGGGGCCGCCAGGGCAAGCTCCCAGTGA
CTGCTTTTGAGGCCTTTGATTTGGAGACTCGTACCTGGACCCGACACCCAAGCCTGCCCAGCCG
CCGGGCCTTTGCTGGCTGCGCCATGGCCGAAGGCAGCATCTTTAGCCTCGGTGGTCTGCAGCAA
CCCGGGCCCCACAATTTCTACTCCCGACCACACTTTGTCAACACTGTGGAGATGTTCGACCTGG
AGCATGGGTCCTGGACCAAGCTGCCCCGCAGCCTGCGCATGAGGGCTAAGAGGGCCGACTTTGT
GGTTGGAGCCCTTGGGGACCACATCGTGGCCATTGGGGGCCTTGGAAACCAGCCATGCCCTCTG
GGCTCAGTAGAAGGCTTCAGCCTTGCACGGCGGCGTTGGGAAGCACTGCCTGCCATGCCCACGG
CCCGCTGCTCTTGCTCTAGTCTGCAGGCTGGACCCTGGCTGTTTGCTATTGGGGGTGTGGCCCA
GGGTCCCAGTCAAGCTGTGGAGGCACTGTGTCTGCGGGATGGGGTCTGAATGTTGATGGGACCT
GTTCACTGATGCAGCTCAGTGACAGAAGCAGACATCTGTGGTTCTTCTGCTGCTGAGGAAGCTC
ACTGTGGCTCTGTGGGATGAGGTGGGGCACTTGAGACATTGTCTTGGGGACTTGAGGGTTGCCT
TCATCTTTAGTGCAGGACACATATACGCTTACACCCTTTACTCCCGTTCATTCATGGACCATGC
CCAGCTCCACCCTTGCTCTGGAACCTACTGGGCCAGAAGTGGGAGAGGGCAGAGCTGGCCTCAT
GCTCCACAAGGTCAGTGCCTACCTGGAGTATATCAGGCCCACCCCAATGGCTGTTCCTGAAAAA
TCCTGTCAGCCTGCCTTGAAGGCCCCTTTGGACCCAGGAGAGTTCAGAGAGGGTGGGTACACAG
AGGGGTGGGGGAGTGGATGCAAGGACCTTCAGAGTGCTAGAAGAATGATGGCTTGGGCCCTATA
CACTGCTGGCTGTGTGACCTTGGGCAAGTCATTTCACCTCTCTGTGCCTCAGCATCCACATCTG
TAAATGGGGATCTCTGAAACCTTCCTACCCTACCTACCTCACAGGGCTGTTGTGAGGATCCAGG
AAGTTCAGATGTGGAAGTAAAAGTGCTGCTAAATCTG

hide sequence

RefSeq Acc Id:

XM_013981665 ⟹ XP_013837119

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	31,775,339 - 31,780,483 (+)	NCBI

Sequence:

show sequence

GGGCGGGTGCCAGCCCCACAAGCCCCCAGGTTCCGCTGGCCCGCCCCTTCACCGGTGTGCCTAG
GCTGGGTCCTCTCTGAACGGCCCCTAACGTACACGTGTCGTGTTCTCCACCGGTGCTTCCTTTC
TCCACCTGCCCGAGGTCGCCCCCAAATCCTGGCCAGGCCCAGTATCCACGTGTCCGTCTGTCTG
TTCACCCGTTTGCGTGACCATGGGTCGGCGCGCCCGGCTCCGGCCACGGCAGGTGAAAGTCCTT
GAACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATATGGGGCCCCATCATGCCCCTCA
GTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGGGGTGAACACCATGGCTACAGG
AGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCCACCTGCCGGGTATATGGTACA
GTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTGGCCGGACTGGACTGCCTCTGG
ACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGCACTGGCGCCCCTGCCCACTGC
TCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCTAGTGGTGGGTGGAGTGGATGAG
GCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGCTGATGAGGGCCGCTGGGAGCGTCGGG
CCACCCTCCCTCAGGCAGCCATGGGGGTTGCGACTATGGAAAGAGATGGTATGGTGTATGCACT
GGGGGGAATGGGCCCTGACACGGCCCCCCAGGCCCAGGTTCGGGTGTATGAACCCCGCCGGGAC
TGCTGGCTTTCGCTGCCCTCGATGCCCACACCCTGCTATGGGGCTTCTACCTTCCTACATGGGA
ACAAGATCTATGTCCTGGGGGGCCGCCAGGGCAAGCTCCCAGTGACTGCTTTTGAGGCCTTTGA
TTTGGAGACTCGTACCTGGACCCGACACCCAAGCCTGCCCAGCCGCCGGGCCTTTGCTGGCTGC
GCCATGGCCGAAGGCAGCATCTTTAGCCTCGGTGGTCTGCAGCAACCCGGGCCCCACAATTTCT
ACTCCCGACCACACTTTGTCAACACTGTGGAGATGTTCGACCTGGAGCATGGGTCCTGGACCAA
GCTGCCCCGCAGCCTGCGCATGAGGGCTAAGAGGGCCGACTTTGTGGTTGGAGCCCTTGGGGAC
CACATCGTGGCCATTGGGGGCCTTGGAAACCAGCCATGCCCTCTGGGCTCAGTAGAAGGCTTCA
GCCTTGCACGGCGGCGTTGGGAAGCACTGCCTGCCATGCCCACGGCCCGCTGCTCTTGCTCTAG
TCTGCAGGCTGGACCCTGGCTGTTTGCTATTGGGGGTGTGGCCCAGGGTCCCAGTCAAGCTGTG
GAGGCACTGTGTCTGCGGGATGGGGTCTGAATGTTGATGGGACCTGTTCACTGATGCAGCTCAG
TGACAGAAGCAGACATCTGTGGTTCTTCTGCTGCTGAGGAAGCTCACTGTGGCTCTGTGGGATG
AGGTGGGGCACTTGAGACATTGTCTTGGGGACTTGAGGGTTGCCTTCATCTTTAGTGCAGGACA
CATATACGCTTACACCCTTTACTCCCGTTCATTCATGGACCATGCCCAGCTCCACCCTTGCTCT
GGAACCTACTGGGCCAGAAGTGGGAGAGGGCAGAGCTGGCCTCATGCTCCACAAGGTCAGTGCC
TACCTGGAGTATATCAGGCCCACCCCAATGGCTGTTCCTGAAAAATCCTGTCAGCCTGCCTTGA
AGGCCCCTTTGGACCCAGGAGAGTTCAGAGAGGGTGGGTACACAGAGGGGTGGGGGAGTGGATG
CAAGGACCTTCAGAGTGCTAGAAGAATGATGGCTTGGGCCCTATACACTGCTGGCTGTGTGACC
TTGGGCAAGTCATTTCACCTCTCTGTGCCTCAGCATCCACATCTGTAAATGGGGATCTCTGAAA
CCTTCCTACCCTACCTACCTCACAGGGCTGTTGTGAGGATCCAGGAAGTTCAGATGTGGAAGTA
AAAGTGCTGCTAAATCTG

hide sequence

RefSeq Acc Id:

XM_013981666 ⟹ XP_013837120

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	31,775,598 - 31,780,483 (+)	NCBI

Sequence:

show sequence

GGAATGGGTTGAGGGGGGCAGGTTTTCTCGAGTCGGGAGGGGGGACGAGAGGCGGACCCCATCC
AGCCCCGCCCCGCGCCGGAGCAGAGCAGGAGCAGAGCCCGAGCCCCGCCGGAGCCCGGCCTCAG
CCCCAGCCAGAGCCCGCACCAGCGTAGCCGGAACCGCGGACCCTGCGCCCCGGCGGCGCCGGAG
CCCCGGCCGGTGAAAGTCCTTGAACTGGCCCCACGCTCTCTTGTAGCCCCAGTAGAGTCAATAT
GGGGCCCCATCATGCCCCTCAGTGAAGCCTGCAGCTTGAGCAGATAGCATGGCCTGCCACTGGG
GGTGAACACCATGGCTACAGGAGGTGGCCGGGCCTTTGCTTGGCAGGTGTTCCCATCCATGCCC
ACCTGCCGGGTATATGGTACAGTGGCATTCCAGGATGGGCACCTGCTAGTTCTAGGGGGCTGTG
GCCGGACTGGACTGCCTCTGGACACTGCAGAGACACTGGACATGGCCTCACATACTTGGCTGGC
ACTGGCGCCCCTGCCCACTGCTCGGGCAGGCGCAGCTGCTGTGGTACTGGGCAAGCAGGTGCTA
GTGGTGGGTGGAGTGGATGAGGCCCAGAGCCCAGTAGCTGCTGTAGAGGCCTTCCTGGCTGATG
AGGGCCGCTGGGAGCGTCGGGCCACCCTCCCTCAGGCAGCCATGGGGGTTGCGACTATGGAAAG
AGGGGGCCGCCAGGGCAAGCTCCCAGTGACTGCTTTTGAGGCCTTTGATTTGGAGACTCGTACC
TGGACCCGACACCCAAGCCTGCCCAGCCGCCGGGCCTTTGCTGGCTGCGCCATGGCCGAAGGCA
GCATCTTTAGCCTCGGTGGTCTGCAGCAACCCGGGCCCCACAATTTCTACTCCCGACCACACTT
TGTCAACACTGTGGAGATGTTCGACCTGGAGCATGGGTCCTGGACCAAGCTGCCCCGCAGCCTG
CGCATGAGGGCTAAGAGGGCCGACTTTGTGGTTGGAGCCCTTGGGGACCACATCGTGGCCATTG
GGGGCCTTGGAAACCAGCCATGCCCTCTGGGCTCAGTAGAAGGCTTCAGCCTTGCACGGCGGCG
TTGGGAAGCACTGCCTGCCATGCCCACGGCCCGCTGCTCTTGCTCTAGTCTGCAGGCTGGACCC
TGGCTGTTTGCTATTGGGGGTGTGGCCCAGGGTCCCAGTCAAGCTGTGGAGGCACTGTGTCTGC
GGGATGGGGTCTGAATGTTGATGGGACCTGTTCACTGATGCAGCTCAGTGACAGAAGCAGACAT
CTGTGGTTCTTCTGCTGCTGAGGAAGCTCACTGTGGCTCTGTGGGATGAGGTGGGGCACTTGAG
ACATTGTCTTGGGGACTTGAGGGTTGCCTTCATCTTTAGTGCAGGACACATATACGCTTACACC
CTTTACTCCCGTTCATTCATGGACCATGCCCAGCTCCACCCTTGCTCTGGAACCTACTGGGCCA
GAAGTGGGAGAGGGCAGAGCTGGCCTCATGCTCCACAAGGTCAGTGCCTACCTGGAGTATATCA
GGCCCACCCCAATGGCTGTTCCTGAAAAATCCTGTCAGCCTGCCTTGAAGGCCCCTTTGGACCC
AGGAGAGTTCAGAGAGGGTGGGTACACAGAGGGGTGGGGGAGTGGATGCAAGGACCTTCAGAGT
GCTAGAAGAATGATGGCTTGGGCCCTATACACTGCTGGCTGTGTGACCTTGGGCAAGTCATTTC
ACCTCTCTGTGCCTCAGCATCCACATCTGTAAATGGGGATCTCTGAAACCTTCCTACCCTACCT
ACCTCACAGGGCTGTTGTGAGGATCCAGGAAGTTCAGATGTGGAAGTAAAAGTGCTGCTAAATC
TG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003132254	(Get FASTA)	NCBI Sequence Viewer
	XP_005669594	(Get FASTA)	NCBI Sequence Viewer
	XP_013837119	(Get FASTA)	NCBI Sequence Viewer
	XP_013837120	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_013837119 ⟸ XM_013981665
- Peptide Label:	isoform X1
- UniProtKB:	F1SPT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGGGRAFAWQVFPSMPTCRVYGTVAFQDGHLLVLGGCGRTGLPLDTAETLDMASHTWLALAP LPTARAGAAAVVLGKQVLVVGGVDEAQSPVAAVEAFLADEGRWERRATLPQAAMGVATMERDGM VYALGGMGPDTAPQAQVRVYEPRRDCWLSLPSMPTPCYGASTFLHGNKIYVLGGRQGKLPVTAF EAFDLETRTWTRHPSLPSRRAFAGCAMAEGSIFSLGGLQQPGPHNFYSRPHFVNTVEMFDLEHG SWTKLPRSLRMRAKRADFVVGALGDHIVAIGGLGNQPCPLGSVEGFSLARRRWEALPAMPTARC SCSSLQAGPWLFAIGGVAQGPSQAVEALCLRDGV hide sequence

RefSeq Acc Id:	XP_013837120 ⟸ XM_013981666
- Peptide Label:	isoform X2
- UniProtKB:	A0A287AN59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGGGRAFAWQVFPSMPTCRVYGTVAFQDGHLLVLGGCGRTGLPLDTAETLDMASHTWLALAP LPTARAGAAAVVLGKQVLVVGGVDEAQSPVAAVEAFLADEGRWERRATLPQAAMGVATMERGGR QGKLPVTAFEAFDLETRTWTRHPSLPSRRAFAGCAMAEGSIFSLGGLQQPGPHNFYSRPHFVNT VEMFDLEHGSWTKLPRSLRMRAKRADFVVGALGDHIVAIGGLGNQPCPLGSVEGFSLARRRWEA LPAMPTARCSCSSLQAGPWLFAIGGVAQGPSQAVEALCLRDGV hide sequence

RefSeq Acc Id:	XP_003132254 ⟸ XM_003132206
- Peptide Label:	isoform X1
- UniProtKB:	F1SPT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGGGRAFAWQVFPSMPTCRVYGTVAFQDGHLLVLGGCGRTGLPLDTAETLDMASHTWLALAP LPTARAGAAAVVLGKQVLVVGGVDEAQSPVAAVEAFLADEGRWERRATLPQAAMGVATMERDGM VYALGGMGPDTAPQAQVRVYEPRRDCWLSLPSMPTPCYGASTFLHGNKIYVLGGRQGKLPVTAF EAFDLETRTWTRHPSLPSRRAFAGCAMAEGSIFSLGGLQQPGPHNFYSRPHFVNTVEMFDLEHG SWTKLPRSLRMRAKRADFVVGALGDHIVAIGGLGNQPCPLGSVEGFSLARRRWEALPAMPTARC SCSSLQAGPWLFAIGGVAQGPSQAVEALCLRDGV hide sequence

RefSeq Acc Id:	XP_005669594 ⟸ XM_005669537
- Peptide Label:	isoform X1
- UniProtKB:	F1SPT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGGGRAFAWQVFPSMPTCRVYGTVAFQDGHLLVLGGCGRTGLPLDTAETLDMASHTWLALAP LPTARAGAAAVVLGKQVLVVGGVDEAQSPVAAVEAFLADEGRWERRATLPQAAMGVATMERDGM VYALGGMGPDTAPQAQVRVYEPRRDCWLSLPSMPTPCYGASTFLHGNKIYVLGGRQGKLPVTAF EAFDLETRTWTRHPSLPSRRAFAGCAMAEGSIFSLGGLQQPGPHNFYSRPHFVNTVEMFDLEHG SWTKLPRSLRMRAKRADFVVGALGDHIVAIGGLGNQPCPLGSVEGFSLARRRWEALPAMPTARC SCSSLQAGPWLFAIGGVAQGPSQAVEALCLRDGV hide sequence

RefSeq Acc Id:

ENSSSCP00000042031 ⟸ ENSSSCT00000055837

RefSeq Acc Id:

ENSSSCP00000045493 ⟸ ENSSSCT00000063236

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011376	UniProtKB/TrEMBL
	ENSSSCG00000011379	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00070004119	UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000012132	UniProtKB/TrEMBL
	ENSSSCP00000042031	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00000045493	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00070006353	UniProtKB/TrEMBL
	ENSSSCP00070006363	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000012457	UniProtKB/TrEMBL
	ENSSSCT00000055837	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00000063236	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00070007730	UniProtKB/TrEMBL
	ENSSSCT00070007740	UniProtKB/TrEMBL
Gene3D-CATH	2.120.10.80	UniProtKB/TrEMBL
InterPro	Gal_Oxase/kelch_b-propeller	UniProtKB/TrEMBL
	IHO1	UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/TrEMBL
	Kelch_1	UniProtKB/TrEMBL
KEGG Report	ssc:100510980	UniProtKB/TrEMBL
NCBI Gene	KLHDC8B	ENTREZGENE
PANTHER	PTHR35662	UniProtKB/TrEMBL
Pfam	IHO1	UniProtKB/TrEMBL
	Kelch_1	UniProtKB/TrEMBL
SMART	Kelch	UniProtKB/TrEMBL
Superfamily-SCOP	SSF117281	UniProtKB/TrEMBL
	SSF50965	UniProtKB/TrEMBL
UniProt	A0A287ADZ4_PIG	UniProtKB/TrEMBL
	A0A287AN59	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1STV4_PIG	UniProtKB/TrEMBL
	A0A4X1SVK8_PIG	UniProtKB/TrEMBL
	F1SPT3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:89509	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM