ADCY6 (adenylate cyclase 6) - Rat Genome Database

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Gene: ADCY6 (adenylate cyclase 6) Sus scrofa
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Symbol: ADCY6
Name: adenylate cyclase 6
RGD ID: 14120497
Description: ENCODES a protein that exhibits adenylate cyclase activity (ortholog); calcium- and calmodulin-responsive adenylate cyclase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cAMP biosynthetic process (ortholog); cellular response to vasopressin (ortholog); circadian rhythm (ortholog); PARTICIPATES IN endothelin signaling pathway; G protein mediated signaling pathway via Galphas family; glucagon signaling pathway; ASSOCIATED WITH genetic disease (ortholog); Lethal Congenital Contracture Syndrome 8 (ortholog); ureteral obstruction (ortholog); FOUND IN endosome (ortholog); microvillus membrane (ortholog); sarcolemma (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenylate cyclase type 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,834,426 - 14,850,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,834,420 - 14,855,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,128,970 - 15,146,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADCY6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,834,426 - 14,850,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,834,420 - 14,855,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,128,970 - 15,146,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADCY6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,766,194 - 48,789,974 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,766,194 - 48,789,089 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,159,977 - 49,182,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,446,248 - 47,469,087 (-)NCBINCBI36Build 36hg18NCBI36
Build 341247,446,247 - 47,469,087NCBI
Celera1247,955,885 - 47,978,715 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,193,406 - 46,216,105 (-)NCBIHuRef
CHM1_11249,125,807 - 49,148,636 (-)NCBICHM1_1
T2T-CHM13v2.01248,728,221 - 48,752,002 (-)NCBIT2T-CHM13v2.0
Adcy6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,484,982 - 98,508,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,487,854 - 98,507,957 (-)EnsemblGRCm39 Ensembl
GRCm381598,589,978 - 98,610,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,589,973 - 98,610,076 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,420,409 - 98,438,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,418,012 - 98,435,667 (-)NCBIMGSCv36mm8
Celera15100,737,585 - 100,755,761 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.59NCBI
Adcy6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,621,860 - 131,642,923 (-)NCBIGRCr8
mRatBN7.27129,742,827 - 129,763,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,742,838 - 129,763,754 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,550,191 - 131,571,121 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,775,741 - 133,796,673 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,688,243 - 133,709,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,270,678 - 140,291,722 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,270,692 - 140,291,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,774,376 - 114,795,062 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,339,933 - 137,360,020 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,418,113 - 137,437,246 (-)NCBI
Celera7126,233,455 - 126,254,162 (-)NCBICelera
Cytogenetic Map7q36NCBI
Adcy6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,637,089 - 7,651,162 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,635,946 - 7,655,579 (-)NCBIChiLan1.0ChiLan1.0
ADCY6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,391,604 - 45,415,339 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,388,364 - 45,412,100 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,957,394 - 39,981,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,836,922 - 40,859,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,836,922 - 40,859,131 (+)Ensemblpanpan1.1panPan2
ADCY6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,739,514 - 5,752,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,733,586 - 5,752,888 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,504,946 - 40,518,306 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,784,673 - 5,805,753 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,788,872 - 5,805,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,754,314 - 5,767,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,744,379 - 5,757,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,897,201 - 40,910,552 (-)NCBIUU_Cfam_GSD_1.0
Adcy6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,529,608 - 66,572,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,615,012 - 6,629,165 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,612,708 - 6,629,202 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADCY6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,006,220 - 45,031,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,005,637 - 45,025,501 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037201,115,865 - 201,140,244 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adcy6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,366,744 - 3,387,447 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,366,594 - 3,387,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ADCY6
540 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2 1
Low 8 2 3 5 2 23 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000000184   ⟹   ENSSSCP00000000182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl514,834,426 - 14,850,728 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074185   ⟹   ENSSSCP00000060703
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl514,834,426 - 14,850,728 (-)Ensembl
RefSeq Acc Id: XM_021091586   ⟹   XP_020947245
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1514,834,420 - 14,855,309 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020947245   ⟸   XM_021091586
- UniProtKB: A0A8D1S0Q1 (UniProtKB/TrEMBL),   F1SPN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000060703   ⟸   ENSSSCT00000074185
RefSeq Acc Id: ENSSSCP00000000182   ⟸   ENSSSCT00000000184
Protein Domains
Guanylate cyclase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000175 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015060014 UniProtKB/TrEMBL
  ENSSSCG00025020107 UniProtKB/TrEMBL
  ENSSSCG00030055471 UniProtKB/TrEMBL
  ENSSSCG00035043054 UniProtKB/TrEMBL
  ENSSSCG00045011455 UniProtKB/TrEMBL
  ENSSSCG00055028696 UniProtKB/TrEMBL
  ENSSSCG00060029818 UniProtKB/TrEMBL
  ENSSSCG00065049753 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000184 ENTREZGENE
  ENSSSCT00000000184.4 UniProtKB/TrEMBL
  ENSSSCT00000074185.1 UniProtKB/TrEMBL
  ENSSSCT00015081156.1 UniProtKB/TrEMBL
  ENSSSCT00025027678.1 UniProtKB/TrEMBL
  ENSSSCT00025027714.1 UniProtKB/TrEMBL
  ENSSSCT00030077365.1 UniProtKB/TrEMBL
  ENSSSCT00035057203.1 UniProtKB/TrEMBL
  ENSSSCT00035057222.1 UniProtKB/TrEMBL
  ENSSSCT00035057253.1 UniProtKB/TrEMBL
  ENSSSCT00045019564.1 UniProtKB/TrEMBL
  ENSSSCT00045019629.1 UniProtKB/TrEMBL
  ENSSSCT00055057101.1 UniProtKB/TrEMBL
  ENSSSCT00055057174.1 UniProtKB/TrEMBL
  ENSSSCT00060040320.1 UniProtKB/TrEMBL
  ENSSSCT00060040328.1 UniProtKB/TrEMBL
  ENSSSCT00065068182.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.1230 UniProtKB/TrEMBL
InterPro A/G_cyclase UniProtKB/TrEMBL
  A/G_cyclase_CS UniProtKB/TrEMBL
  AC_N UniProtKB/TrEMBL
  Adcy UniProtKB/TrEMBL
  Adcy_conserved_dom UniProtKB/TrEMBL
  Nucleotide_cyclase UniProtKB/TrEMBL
NCBI Gene ADCY6 ENTREZGENE
PANTHER ADENYLATE CYCLASE TYPE 1 UniProtKB/TrEMBL
  ADENYLATE CYCLASE TYPE 6 UniProtKB/TrEMBL
Pfam AC_N UniProtKB/TrEMBL
  DUF1053 UniProtKB/TrEMBL
  Guanylate_cyc UniProtKB/TrEMBL
PIRSF Ade_cyc UniProtKB/TrEMBL
PROSITE GUANYLATE_CYCLASE_1 UniProtKB/TrEMBL
  GUANYLATE_CYCLASE_2 UniProtKB/TrEMBL
SMART CYCc UniProtKB/TrEMBL
Superfamily-SCOP SSF55073 UniProtKB/TrEMBL
UniProt A0A5G2Q9R4_PIG UniProtKB/TrEMBL
  A0A8D0ZSQ9_PIG UniProtKB/TrEMBL
  A0A8D1A103_PIG UniProtKB/TrEMBL
  A0A8D1HD76_PIG UniProtKB/TrEMBL
  A0A8D1KUX1_PIG UniProtKB/TrEMBL
  A0A8D1S0Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V080_PIG UniProtKB/TrEMBL
  F1SPN5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85110 ENTREZGENE