DRGX (dorsal root ganglia homeobox) - Rat Genome Database

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Gene: DRGX (dorsal root ganglia homeobox) Sus scrofa
Analyze
Symbol: DRGX
Name: dorsal root ganglia homeobox
RGD ID: 14118785
Description: ENCODES a protein that exhibits DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); axonogenesis (ortholog); detection of chemical stimulus (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); schizophrenia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dorsal root ganglia homeobox protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,942,251 - 89,976,030 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,941,793 - 89,975,613 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,851,058 - 97,884,297 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References

Genomics

Comparative Map Data
DRGX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,942,251 - 89,976,030 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,941,793 - 89,975,613 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,851,058 - 97,884,297 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DRGX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1049,364,066 - 49,396,089 (-)EnsemblGRCh38hg38GRCh38
GRCh381049,364,066 - 49,396,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371050,572,111 - 50,604,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,244,167 - 50,269,913 (-)NCBINCBI36hg18NCBI36
Celera1044,160,334 - 44,186,078 (-)NCBI
Cytogenetic Map10q11.23NCBI
HuRef1044,838,688 - 44,868,588 (-)NCBIHuRef
CHM1_11050,856,344 - 50,886,243 (-)NCBICHM1_1
Prrxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,317,824 - 32,371,203 (+)NCBIGRCm39mm39
GRCm39 Ensembl1432,321,364 - 32,371,203 (+)Ensembl
GRCm381432,595,867 - 32,649,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,599,407 - 32,649,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv371433,413,113 - 33,462,432 (+)NCBIGRCm37mm9NCBIm37
MGSCv361431,428,936 - 31,478,256 (+)NCBImm8
Celera1428,856,722 - 28,906,126 (+)NCBICelera
Cytogenetic Map14BNCBI
Drgx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2167,854,849 - 7,884,404 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl167,854,849 - 7,900,600 (+)Ensembl
Rnor_6.0168,823,872 - 8,853,430 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,823,872 - 8,853,430 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01610,789,700 - 10,820,026 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,110,849 - 8,140,551 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1168,110,846 - 8,140,549 (+)NCBI
Celera167,317,250 - 7,346,264 (-)NCBICelera
Cytogenetic Map16p16NCBI
Drgx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556842,714 - 870,248 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955556842,714 - 870,248 (+)NCBIChiLan1.0ChiLan1.0
DRGX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01044,845,622 - 44,880,512 (+)NCBIMhudiblu_PPA_v0panPan3
DRGX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,281,868 - 1,316,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,281,864 - 1,314,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,517,204 - 1,549,503 (-)NCBI
ROS_Cfam_1.0281,458,411 - 1,490,723 (-)NCBI
UMICH_Zoey_3.1281,256,649 - 1,288,953 (-)NCBI
UNSW_CanFamBas_1.0281,293,756 - 1,326,052 (-)NCBI
UU_Cfam_GSD_1.0281,425,597 - 1,457,907 (-)NCBI
Drgx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,687,434 - 79,722,279 (+)NCBI
SpeTri2.0NW_004936728892,814 - 923,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DRGX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,415,442 - 42,447,912 (+)NCBI
ChlSab1.1 Ensembl942,416,021 - 42,445,858 (+)Ensembl
Vero_WHO_p1.0NW_0236660482,169,188 - 2,201,899 (+)NCBI
Drgx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624928566,405 - 592,561 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low 8
Below cutoff 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021073531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000051256   ⟹   ENSSSCP00000039579
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1489,942,251 - 89,976,030 (-)Ensembl
RefSeq Acc Id: XM_021073531   ⟹   XP_020929190
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11489,941,793 - 89,975,613 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020929190 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020929190   ⟸   XM_021073531
- Sequence:
RefSeq Acc Id: ENSSSCP00000039579   ⟸   ENSSSCT00000051256
Protein Domains
Homeobox   OAR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037404 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070023944 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000039579 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070040310 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051256 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070047769 UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  OAR_dom UniProtKB/TrEMBL
NCBI Gene DRGX ENTREZGENE
Pfam Homeodomain UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287A6K3_PIG UniProtKB/TrEMBL
  A0A4X1VB25_PIG UniProtKB/TrEMBL
VGNC ID VGNC:97968 ENTREZGENE