YIPF2 (Yip1 domain family member 2) - Rat Genome Database

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Gene: YIPF2 (Yip1 domain family member 2) Sus scrofa
Analyze
Symbol: YIPF2
Name: Yip1 domain family member 2
RGD ID: 14118022
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN vesicle-mediated transport (inferred); ASSOCIATED WITH familial hypercholesterolemia (ortholog); FOUND IN endosome membrane (inferred); Golgi apparatus (inferred); Golgi medial cisterna (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein YIPF2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,641,052 - 69,649,824 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,079,512 - 70,084,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
YIPF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,641,052 - 69,649,824 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,079,512 - 70,084,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YIPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,922,193 - 10,928,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1910,922,185 - 10,928,681 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,032,869 - 11,039,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,894,444 - 10,900,357 (-)NCBINCBI36Build 36hg18NCBI36
Celera1910,928,285 - 10,934,198 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,611,338 - 10,617,251 (-)NCBIHuRef
CHM1_11911,034,607 - 11,040,520 (-)NCBICHM1_1
T2T-CHM13v2.01911,049,204 - 11,055,650 (-)NCBIT2T-CHM13v2.0
Yipf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,499,978 - 21,504,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,499,978 - 21,504,124 (-)EnsemblGRCm39 Ensembl
GRCm38921,588,682 - 21,592,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,588,682 - 21,592,828 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,393,126 - 21,397,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,339,084 - 21,343,148 (-)NCBIMGSCv36mm8
Celera918,858,302 - 18,862,366 (-)NCBICelera
Cytogenetic Map9A3NCBI
Yipf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2820,141,148 - 20,145,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,141,155 - 20,145,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,173,258 - 24,177,468 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0822,468,810 - 22,473,020 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0820,370,780 - 20,374,981 (-)NCBIRnor_WKY
Rnor_6.0822,621,758 - 22,625,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,621,782 - 22,625,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,675,712 - 22,679,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,694,350 - 20,698,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,694,359 - 20,698,551 (-)NCBI
Celera821,532,460 - 21,536,661 (-)NCBICelera
Cytogenetic Map8q13NCBI
Yipf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,997,720 - 2,006,264 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,001,458 - 2,005,880 (-)NCBIChiLan1.0ChiLan1.0
YIPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,195,553 - 11,201,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,195,562 - 11,203,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01910,475,806 - 10,482,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
YIPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,326,437 - 50,331,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,325,271 - 50,331,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBIUU_Cfam_GSD_1.0
Yipf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,228,218 - 209,234,338 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,120,483 - 1,126,403 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366591,120,365 - 1,126,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,915,133 - 9,927,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,916,223 - 9,927,902 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,023,539 - 10,029,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Yipf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,871,556 - 2,875,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,871,547 - 2,875,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003123204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021083825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021083826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002341645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK235009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK350887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK350957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK391831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU928849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01037717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000014889   ⟹   ENSSSCP00000014488
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,644,006 - 69,649,521 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041551   ⟹   ENSSSCP00000034619
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,641,052 - 69,649,824 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060802   ⟹   ENSSSCP00000051544
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,644,009 - 69,649,521 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085424   ⟹   ENSSSCP00000074117
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,644,006 - 69,649,521 (-)Ensembl
RefSeq Acc Id: XM_003123204   ⟹   XP_003123252
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661250   ⟹   XP_005661307
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013994685   ⟹   XP_013850139
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083825   ⟹   XP_020939484
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,567 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083826   ⟹   XP_020939485
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341640
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,008 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341641
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,008 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341642
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,008 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341643
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,008 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341644
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,580 - 69,649,691 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341645
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,644,580 - 69,649,691 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003123252   ⟸   XM_003123204
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VD29 (UniProtKB/TrEMBL),   F1S589 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939485   ⟸   XM_021083826
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005661307   ⟸   XM_005661250
- Peptide Label: isoform X2
- UniProtKB: F1S589 (UniProtKB/TrEMBL),   A0A481CLA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013850139   ⟸   XM_013994685
- Peptide Label: isoform X2
- UniProtKB: F1S589 (UniProtKB/TrEMBL),   A0A481CLA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939484   ⟸   XM_021083825
- Peptide Label: isoform X1
- UniProtKB: A0A8D1BVW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034619   ⟸   ENSSSCT00000041551
RefSeq Acc Id: ENSSSCP00000051544   ⟸   ENSSSCT00000060802
RefSeq Acc Id: ENSSSCP00000074117   ⟸   ENSSSCT00000085424
RefSeq Acc Id: ENSSSCP00000014488   ⟸   ENSSSCT00000014889
Protein Domains
Yip1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013634 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025074797 UniProtKB/TrEMBL
  ENSSSCG00040004429 UniProtKB/TrEMBL
  ENSSSCG00045028024 UniProtKB/TrEMBL
  ENSSSCG00050050422 UniProtKB/TrEMBL
  ENSSSCG00055016431 UniProtKB/TrEMBL
  ENSSSCG00065076283 UniProtKB/TrEMBL
  ENSSSCG00070024354 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000014488 ENTREZGENE
  ENSSSCP00000014488.3 UniProtKB/TrEMBL
  ENSSSCP00000034619.2 UniProtKB/TrEMBL
  ENSSSCP00000051544.2 UniProtKB/TrEMBL
  ENSSSCP00000074117.1 UniProtKB/TrEMBL
  ENSSSCP00025045700.1 UniProtKB/TrEMBL
  ENSSSCP00025045744.1 UniProtKB/TrEMBL
  ENSSSCP00040002295.1 UniProtKB/TrEMBL
  ENSSSCP00040002299.1 UniProtKB/TrEMBL
  ENSSSCP00045033246.1 UniProtKB/TrEMBL
  ENSSSCP00045033310.1 UniProtKB/TrEMBL
  ENSSSCP00050029436.1 UniProtKB/TrEMBL
  ENSSSCP00050029439.1 UniProtKB/TrEMBL
  ENSSSCP00055025984.1 UniProtKB/TrEMBL
  ENSSSCP00055026038.1 UniProtKB/TrEMBL
  ENSSSCP00055026140.1 UniProtKB/TrEMBL
  ENSSSCP00065046724.1 UniProtKB/TrEMBL
  ENSSSCP00065046726.1 UniProtKB/TrEMBL
  ENSSSCP00070041121.1 UniProtKB/TrEMBL
  ENSSSCP00070041149.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014889 ENTREZGENE
  ENSSSCT00000014889.4 UniProtKB/TrEMBL
  ENSSSCT00000041551.2 UniProtKB/TrEMBL
  ENSSSCT00000060802.2 UniProtKB/TrEMBL
  ENSSSCT00000085424.1 UniProtKB/TrEMBL
  ENSSSCT00025103157.1 UniProtKB/TrEMBL
  ENSSSCT00025103227.1 UniProtKB/TrEMBL
  ENSSSCT00040005891.1 UniProtKB/TrEMBL
  ENSSSCT00040005895.1 UniProtKB/TrEMBL
  ENSSSCT00045047853.1 UniProtKB/TrEMBL
  ENSSSCT00045047936.1 UniProtKB/TrEMBL
  ENSSSCT00050068606.1 UniProtKB/TrEMBL
  ENSSSCT00050068615.1 UniProtKB/TrEMBL
  ENSSSCT00055032622.1 UniProtKB/TrEMBL
  ENSSSCT00055032687.1 UniProtKB/TrEMBL
  ENSSSCT00055032817.1 UniProtKB/TrEMBL
  ENSSSCT00065105329.1 UniProtKB/TrEMBL
  ENSSSCT00065105331.1 UniProtKB/TrEMBL
  ENSSSCT00070048696.1 UniProtKB/TrEMBL
  ENSSSCT00070048732.1 UniProtKB/TrEMBL
InterPro Yip1 UniProtKB/TrEMBL
  Yip5/YIPF1/YIPF2 UniProtKB/TrEMBL
KEGG Report ssc:100521840 UniProtKB/TrEMBL
NCBI Gene YIPF2 ENTREZGENE
PANTHER PTHR12822 UniProtKB/TrEMBL
Pfam Yip1 UniProtKB/TrEMBL
UniProt A0A286ZT15_PIG UniProtKB/TrEMBL
  A0A287B632_PIG UniProtKB/TrEMBL
  A0A481CLA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VD29 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VJV3_PIG UniProtKB/TrEMBL
  A0A5G2RAT3_PIG UniProtKB/TrEMBL
  A0A8D1BVW8 ENTREZGENE, UniProtKB/TrEMBL
  F1S589 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95028 ENTREZGENE