LOC100624785 (tubulin beta-2A chain) - Rat Genome Database

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Gene: LOC100624785 (tubulin beta-2A chain) Sus scrofa
Analyze
Symbol: LOC100624785 (Ensembl: TUBB2A)
Name: tubulin beta-2A chain (Ensembl:tubulin beta 2A class IIa)
RGD ID: 14117924
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN embryonic brain development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); bilateral perisylvian polymicrogyria (ortholog); carcinoma (ortholog); FOUND IN Schaffer collateral - CA1 synapse (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,910,269 - 1,914,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,910,585 - 1,914,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,975,079 - 1,987,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100624785
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,910,269 - 1,914,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,910,585 - 1,914,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,975,079 - 1,987,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUBB2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3863,224,277 - 3,227,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl63,223,324 - 3,231,730 (-)EnsemblGRCh38hg38GRCh38
GRCh3763,224,511 - 3,227,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,169,510 - 3,172,870 (-)NCBINCBI36Build 36hg18NCBI36
Celera64,453,394 - 4,456,867 (-)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef63,102,307 - 3,105,779 (-)NCBIHuRef
CHM1_163,226,964 - 3,230,437 (-)NCBICHM1_1
T2T-CHM13v2.063,092,680 - 3,096,055 (-)NCBIT2T-CHM13v2.0
Tubb2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391334,310,991 - 34,314,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1334,310,731 - 34,314,449 (-)EnsemblGRCm39 Ensembl
GRCm381334,127,008 - 34,130,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,126,748 - 34,130,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv371334,218,877 - 34,222,223 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361334,134,473 - 34,137,819 (-)NCBIMGSCv36mm8
Celera1335,261,212 - 35,264,555 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.04NCBI
Tubb2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,953,086 - 30,956,133 (+)NCBIGRCr8
mRatBN7.21730,747,734 - 30,750,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1730,747,734 - 30,750,638 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1730,560,900 - 30,563,955 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01732,164,652 - 32,167,707 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01730,556,638 - 30,559,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01731,441,640 - 31,444,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1731,441,630 - 31,482,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01733,336,065 - 33,339,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,087,922 - 37,090,969 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,142,086 - 37,145,700 (+)NCBI
Celera1730,312,117 - 30,315,164 (+)NCBICelera
Cytogenetic Map17p12NCBI
LOC478702
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,494,982 - 3,498,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,495,277 - 3,498,248 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,505,910 - 3,509,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,555,009 - 3,558,303 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,505,153 - 3,558,836 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,431,487 - 3,434,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,453,807 - 3,457,098 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,786,156 - 4,789,450 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100624785
88 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 19
Low 9 4 3 5 2 4 2 2 3
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000037872   ⟹   ENSSSCP00000045099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,774 - 1,914,668 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000038258   ⟹   ENSSSCP00000043486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,588 - 1,914,668 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040472   ⟹   ENSSSCP00000039578
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,952,881 - 1,955,669 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041293   ⟹   ENSSSCP00000031328
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,588 - 1,914,559 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045032   ⟹   ENSSSCP00000032857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,588 - 1,914,761 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045442   ⟹   ENSSSCP00000049151
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,951,407 - 1,956,119 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046321   ⟹   ENSSSCP00000051702
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,952,289 - 1,955,889 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049131   ⟹   ENSSSCP00000042230
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,952,289 - 1,955,889 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061609   ⟹   ENSSSCP00000043130
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,951,405 - 1,955,781 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064196   ⟹   ENSSSCP00000037449
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,269 - 1,914,668 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077770   ⟹   ENSSSCP00000064228
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,655 - 1,913,557 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087220   ⟹   ENSSSCP00000062348
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,912,202 - 1,914,668 (-)Ensembl
RefSeq Acc Id: XM_021100120   ⟹   XP_020955779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.171,910,585 - 1,914,668 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020955779   ⟸   XM_021100120
- UniProtKB: A0A4X1SP90 (UniProtKB/TrEMBL),   A0A287AHL4 (UniProtKB/TrEMBL),   A0A480PUY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000037449   ⟸   ENSSSCT00000064196
RefSeq Acc Id: ENSSSCP00000039578   ⟸   ENSSSCT00000040472
RefSeq Acc Id: ENSSSCP00000042230   ⟸   ENSSSCT00000049131
RefSeq Acc Id: ENSSSCP00000031328   ⟸   ENSSSCT00000041293
RefSeq Acc Id: ENSSSCP00000032857   ⟸   ENSSSCT00000045032
RefSeq Acc Id: ENSSSCP00000049151   ⟸   ENSSSCT00000045442
RefSeq Acc Id: ENSSSCP00000043130   ⟸   ENSSSCT00000061609
RefSeq Acc Id: ENSSSCP00000051702   ⟸   ENSSSCT00000046321
RefSeq Acc Id: ENSSSCP00000043486   ⟸   ENSSSCT00000038258
RefSeq Acc Id: ENSSSCP00000045099   ⟸   ENSSSCT00000037872
RefSeq Acc Id: ENSSSCP00000064228   ⟸   ENSSSCT00000077770
RefSeq Acc Id: ENSSSCP00000062348   ⟸   ENSSSCT00000087220

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033655 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000062050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035045388 UniProtKB/TrEMBL
  ENSSSCG00040025799 UniProtKB/TrEMBL
  ENSSSCG00050063250 UniProtKB/TrEMBL
  ENSSSCG00055019735 UniProtKB/TrEMBL
  ENSSSCG00060013197 UniProtKB/TrEMBL
  ENSSSCG00065037412 UniProtKB/TrEMBL
  ENSSSCG00070002794 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037872.3 UniProtKB/TrEMBL
  ENSSSCT00000038258 ENTREZGENE
  ENSSSCT00000038258.3 UniProtKB/TrEMBL
  ENSSSCT00000040472.3 UniProtKB/TrEMBL
  ENSSSCT00000041293.3 UniProtKB/TrEMBL
  ENSSSCT00000045032.3 UniProtKB/TrEMBL
  ENSSSCT00000045442.3 UniProtKB/TrEMBL
  ENSSSCT00000046321.3 UniProtKB/TrEMBL
  ENSSSCT00000049131.3 UniProtKB/TrEMBL
  ENSSSCT00000064196.3 UniProtKB/TrEMBL
  ENSSSCT00000077770.2 UniProtKB/TrEMBL
  ENSSSCT00000087220.2 UniProtKB/TrEMBL
  ENSSSCT00035060295.1 UniProtKB/TrEMBL
  ENSSSCT00035060386.1 UniProtKB/TrEMBL
  ENSSSCT00035060393.1 UniProtKB/TrEMBL
  ENSSSCT00035060448.1 UniProtKB/TrEMBL
  ENSSSCT00035060458.1 UniProtKB/TrEMBL
  ENSSSCT00040034649.1 UniProtKB/TrEMBL
  ENSSSCT00040034876.1 UniProtKB/TrEMBL
  ENSSSCT00040034891.1 UniProtKB/TrEMBL
  ENSSSCT00040034960.1 UniProtKB/TrEMBL
  ENSSSCT00050086203.1 UniProtKB/TrEMBL
  ENSSSCT00050086239.1 UniProtKB/TrEMBL
  ENSSSCT00050086270.1 UniProtKB/TrEMBL
  ENSSSCT00050086284.1 UniProtKB/TrEMBL
  ENSSSCT00055038731.1 UniProtKB/TrEMBL
  ENSSSCT00055038774.1 UniProtKB/TrEMBL
  ENSSSCT00055038849.1 UniProtKB/TrEMBL
  ENSSSCT00055038938.1 UniProtKB/TrEMBL
  ENSSSCT00055039007.1 UniProtKB/TrEMBL
  ENSSSCT00055039053.1 UniProtKB/TrEMBL
  ENSSSCT00055039282.1 UniProtKB/TrEMBL
  ENSSSCT00060017341.1 UniProtKB/TrEMBL
  ENSSSCT00060017424.1 UniProtKB/TrEMBL
  ENSSSCT00060017426.1 UniProtKB/TrEMBL
  ENSSSCT00060017434.1 UniProtKB/TrEMBL
  ENSSSCT00060017440.1 UniProtKB/TrEMBL
  ENSSSCT00060017458.1 UniProtKB/TrEMBL
  ENSSSCT00065051139.1 UniProtKB/TrEMBL
  ENSSSCT00065051165.1 UniProtKB/TrEMBL
  ENSSSCT00065051185.1 UniProtKB/TrEMBL
  ENSSSCT00070005303.1 UniProtKB/TrEMBL
  ENSSSCT00070005339.1 UniProtKB/TrEMBL
  ENSSSCT00070005383.1 UniProtKB/TrEMBL
  ENSSSCT00070005390.1 UniProtKB/TrEMBL
  ENSSSCT00070005400.1 UniProtKB/TrEMBL
  ENSSSCT00070005404.1 UniProtKB/TrEMBL
  ENSSSCT00070005409.1 UniProtKB/TrEMBL
  ENSSSCT00070005416.1 UniProtKB/TrEMBL
  ENSSSCT00070005422.1 UniProtKB/TrEMBL
  ENSSSCT00070005438.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Beta-tubulin_BS UniProtKB/TrEMBL
  Beta_tubulin UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_C_sf UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
NCBI Gene LOC100624785 ENTREZGENE
PANTHER PTHR11588 UniProtKB/TrEMBL
  TUBULIN BETA-2A CHAIN UniProtKB/TrEMBL
  TUBULIN BETA-2B CHAIN UniProtKB/TrEMBL
Pfam Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS BETATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
  TUBULIN_B_AUTOREG UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A286ZIQ8_PIG UniProtKB/TrEMBL
  A0A286ZN27_PIG UniProtKB/TrEMBL
  A0A287A0J1_PIG UniProtKB/TrEMBL
  A0A287A6Y9_PIG UniProtKB/TrEMBL
  A0A287AEI4_PIG UniProtKB/TrEMBL
  A0A287AHL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AMG3_PIG UniProtKB/TrEMBL
  A0A287AZ37_PIG UniProtKB/TrEMBL
  A0A287B5H7_PIG UniProtKB/TrEMBL
  A0A480PUY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SP34_PIG UniProtKB/TrEMBL
  A0A4X1SP90 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SPK8_PIG UniProtKB/TrEMBL
  A0A4X1SQL0_PIG UniProtKB/TrEMBL
  A0A4X1SQQ0_PIG UniProtKB/TrEMBL
  A0A5G2QDX3_PIG UniProtKB/TrEMBL
  A0A5G2QHG1_PIG UniProtKB/TrEMBL
  A0A8D0ZVA0_PIG UniProtKB/TrEMBL
  A0A8D0ZZ41_PIG UniProtKB/TrEMBL
  A0A8D1A0W4_PIG UniProtKB/TrEMBL
  A0A8D1R7Z7_PIG UniProtKB/TrEMBL
  A0A8D1RGM6_PIG UniProtKB/TrEMBL