LOC100624785 (tubulin beta-2A chain) - Rat Genome Database

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Gene: LOC100624785 (tubulin beta-2A chain) Sus scrofa
Analyze
Symbol: LOC100624785
Name: tubulin beta-2A chain
RGD ID: 14117924
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); protein heterodimerization activity (inferred); INVOLVED IN embryonic brain development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Asymmetric Polymicrogyria (ortholog); carcinoma (ortholog); FOUND IN microtubule cytoskeleton (ortholog); Schaffer collateral - CA1 synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,910,585 - 1,956,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,910,585 - 1,914,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,975,079 - 1,987,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
LOC100624785
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,910,585 - 1,956,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,910,585 - 1,914,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,975,079 - 1,987,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUBB2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl63,223,324 - 3,231,730 (-)EnsemblGRCh38hg38GRCh38
GRCh3863,224,277 - 3,227,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3763,224,511 - 3,227,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,169,510 - 3,172,870 (-)NCBINCBI36hg18NCBI36
Celera64,453,394 - 4,456,867 (-)NCBI
Cytogenetic Map6p25.2NCBI
HuRef63,102,307 - 3,105,779 (-)NCBIHuRef
CHM1_163,226,964 - 3,230,437 (-)NCBICHM1_1
Tubb2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391334,310,991 - 34,314,337 (-)NCBIGRCm39mm39
GRCm39 Ensembl1334,310,731 - 34,314,449 (-)Ensembl
GRCm381334,127,008 - 34,130,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,126,748 - 34,130,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv371334,218,877 - 34,222,223 (-)NCBIGRCm37mm9NCBIm37
MGSCv361334,134,473 - 34,137,819 (-)NCBImm8
Celera1335,261,212 - 35,264,555 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
Tubb2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21730,747,734 - 30,750,781 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1730,747,734 - 30,750,638 (+)Ensembl
Rnor_6.01731,441,640 - 31,444,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1731,441,630 - 31,482,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01733,336,065 - 33,339,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,087,922 - 37,090,969 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11737,142,086 - 37,145,700 (+)NCBI
Celera1730,312,117 - 30,315,164 (+)NCBICelera
Cytogenetic Map17p12NCBI
LOC478702
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,494,982 - 3,498,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,495,277 - 3,498,248 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,505,910 - 3,509,204 (-)NCBI
ROS_Cfam_1.0353,555,009 - 3,558,303 (-)NCBI
UMICH_Zoey_3.1353,431,487 - 3,434,784 (-)NCBI
UNSW_CanFamBas_1.0353,453,807 - 3,457,098 (-)NCBI
UU_Cfam_GSD_1.0354,786,156 - 4,789,450 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 19
Low 9 4 3 5 2 4 2 2 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037872   ⟹   ENSSSCP00000045099
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,955,951 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000038258   ⟹   ENSSSCP00000043486
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,955,844 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040472   ⟹   ENSSSCP00000039578
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,914,761 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041293   ⟹   ENSSSCP00000031328
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,955,777 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045032   ⟹   ENSSSCP00000032857
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,955,951 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045442   ⟹   ENSSSCP00000049151
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,951,405 - 1,956,119 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046321   ⟹   ENSSSCP00000051702
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,608 - 1,955,951 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049131   ⟹   ENSSSCP00000042230
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,608 - 1,955,889 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061609   ⟹   ENSSSCP00000043130
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,951,405 - 1,955,781 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064196   ⟹   ENSSSCP00000037449
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,910,585 - 1,914,637 (-)Ensembl
RefSeq Acc Id: XM_021100120   ⟹   XP_020955779
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.171,910,585 - 1,914,668 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955779 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020955779   ⟸   XM_021100120
- Sequence:
RefSeq Acc Id: ENSSSCP00000037449   ⟸   ENSSSCT00000064196
RefSeq Acc Id: ENSSSCP00000039578   ⟸   ENSSSCT00000040472
RefSeq Acc Id: ENSSSCP00000042230   ⟸   ENSSSCT00000049131
RefSeq Acc Id: ENSSSCP00000031328   ⟸   ENSSSCT00000041293
RefSeq Acc Id: ENSSSCP00000032857   ⟸   ENSSSCT00000045032
RefSeq Acc Id: ENSSSCP00000049151   ⟸   ENSSSCT00000045442
RefSeq Acc Id: ENSSSCP00000043130   ⟸   ENSSSCT00000061609
RefSeq Acc Id: ENSSSCP00000051702   ⟸   ENSSSCT00000046321
RefSeq Acc Id: ENSSSCP00000043486   ⟸   ENSSSCT00000038258
RefSeq Acc Id: ENSSSCP00000045099   ⟸   ENSSSCT00000037872
Protein Domains
Tubulin   Tubulin_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070002794 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000031328 UniProtKB/TrEMBL
  ENSSSCP00000032857 UniProtKB/TrEMBL
  ENSSSCP00000037449 UniProtKB/TrEMBL
  ENSSSCP00000039578 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000042230 UniProtKB/TrEMBL
  ENSSSCP00000043486 UniProtKB/TrEMBL
  ENSSSCP00000045099 UniProtKB/TrEMBL
  ENSSSCP00000049151 UniProtKB/TrEMBL
  ENSSSCP00000051702 UniProtKB/TrEMBL
  ENSSSCP00070004307 UniProtKB/TrEMBL
  ENSSSCP00070004336 UniProtKB/TrEMBL
  ENSSSCP00070004371 UniProtKB/TrEMBL
  ENSSSCP00070004377 UniProtKB/TrEMBL
  ENSSSCP00070004386 UniProtKB/TrEMBL
  ENSSSCP00070004391 UniProtKB/TrEMBL
  ENSSSCP00070004395 UniProtKB/TrEMBL
  ENSSSCP00070004402 UniProtKB/TrEMBL
  ENSSSCP00070004408 UniProtKB/TrEMBL
  ENSSSCP00070004424 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037872 UniProtKB/TrEMBL
  ENSSSCT00000038258 UniProtKB/TrEMBL
  ENSSSCT00000040472 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000041293 UniProtKB/TrEMBL
  ENSSSCT00000045032 UniProtKB/TrEMBL
  ENSSSCT00000045442 UniProtKB/TrEMBL
  ENSSSCT00000046321 UniProtKB/TrEMBL
  ENSSSCT00000049131 UniProtKB/TrEMBL
  ENSSSCT00000064196 UniProtKB/TrEMBL
  ENSSSCT00070005303 UniProtKB/TrEMBL
  ENSSSCT00070005339 UniProtKB/TrEMBL
  ENSSSCT00070005383 UniProtKB/TrEMBL
  ENSSSCT00070005390 UniProtKB/TrEMBL
  ENSSSCT00070005400 UniProtKB/TrEMBL
  ENSSSCT00070005404 UniProtKB/TrEMBL
  ENSSSCT00070005409 UniProtKB/TrEMBL
  ENSSSCT00070005416 UniProtKB/TrEMBL
  ENSSSCT00070005422 UniProtKB/TrEMBL
  ENSSSCT00070005438 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Beta-tubulin_BS UniProtKB/TrEMBL
  Beta_tubulin UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_C_sf UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
NCBI Gene LOC100624785 ENTREZGENE
PANTHER PTHR11588 UniProtKB/TrEMBL
Pfam Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS BETATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
  TUBULIN_B_AUTOREG UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A287A0J1_PIG UniProtKB/TrEMBL
  A0A287A6Y9_PIG UniProtKB/TrEMBL
  A0A287AHL4_PIG UniProtKB/TrEMBL
  A0A287AZ37_PIG UniProtKB/TrEMBL
  A0A287B5H7_PIG UniProtKB/TrEMBL
  A0A4X1SP34_PIG UniProtKB/TrEMBL
  A0A4X1SP90_PIG UniProtKB/TrEMBL
  A0A4X1SPK8_PIG UniProtKB/TrEMBL
  A0A4X1SQL0_PIG UniProtKB/TrEMBL
  A0A4X1SQQ0_PIG UniProtKB/TrEMBL