BPNT2 (3'(2'), 5'-bisphosphate nucleotidase 2) - Rat Genome Database

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Gene: BPNT2 (3'(2'), 5'-bisphosphate nucleotidase 2) Sus scrofa
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Symbol: BPNT2
Name: 3'(2'), 5'-bisphosphate nucleotidase 2
RGD ID: 14117028
Description: ENCODES a protein that exhibits 3',5'-nucleotide bisphosphate phosphatase activity (ortholog); INVOLVED IN chondrocyte development (ortholog); chondroitin sulfate metabolic process (ortholog); embryonic digit morphogenesis (ortholog); ASSOCIATED WITH chondrodysplasia with joint dislocations gPAPP type (ortholog); genetic disease (ortholog); osteochondrodysplasia (ortholog); FOUND IN trans-Golgi network membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Golgi 3-prime phosphoadenosine 5-prime phosphate 3-prime phosphatase; Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase; Golgi-resident PAP phosphatase; gPAPP; IMP 3; IMPA3; IMPAD1; IMPase 3; inositol monophosphatase 3; inositol monophosphatase domain containing 1; Inositol monophosphatase domain-containing protein 1; Inositol-1(or 4)-monophosphatase 3; Myo-inositol monophosphatase A3; phosphoadenosine phosphate 3'-nucleotidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,191,257 - 75,215,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,191,256 - 75,210,988 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,110,550 - 82,130,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:17407547   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BPNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,191,257 - 75,215,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,191,256 - 75,210,988 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,110,550 - 82,130,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,957,931 - 56,993,867 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,957,931 - 56,993,867 (-)EnsemblGRCh38hg38GRCh38
GRCh37857,870,490 - 57,906,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36858,033,042 - 58,068,981 (-)NCBINCBI36Build 36hg18NCBI36
Celera853,861,222 - 53,897,192 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef853,338,861 - 53,374,799 (-)NCBIHuRef
CHM1_1857,922,244 - 57,958,186 (-)NCBICHM1_1
T2T-CHM13v2.0857,335,005 - 57,370,940 (-)NCBIT2T-CHM13v2.0
Bpnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3944,762,484 - 4,793,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl44,762,484 - 4,793,355 (-)EnsemblGRCm39 Ensembl
GRCm3844,762,484 - 4,793,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl44,762,484 - 4,793,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv3744,691,489 - 4,720,453 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3644,691,489 - 4,720,453 (-)NCBIMGSCv36mm8
Celera44,712,407 - 4,741,376 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.56NCBI
Bpnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8522,573,241 - 22,600,126 (-)NCBIGRCr8
mRatBN7.2517,775,684 - 17,802,570 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl517,772,608 - 17,802,570 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx520,008,545 - 20,035,424 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0521,607,051 - 21,633,933 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0521,357,304 - 21,388,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01790,191,119 - 90,218,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl517,633,766 - 17,663,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1790,188,043 - 90,218,013 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0522,419,595 - 22,446,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4518,086,121 - 18,109,691 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera517,116,716 - 17,144,147 (-)NCBICelera
Cytogenetic Map5q12NCBI
Bpnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545415,899,820 - 15,918,222 (-)NCBIChiLan1.0ChiLan1.0
BPNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2772,600,102 - 72,635,725 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1848,323,401 - 48,359,034 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0853,385,837 - 53,417,019 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1850,753,792 - 50,785,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl850,753,792 - 50,785,055 (-)Ensemblpanpan1.1panPan2
BPNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1298,176,977 - 8,215,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl298,182,508 - 8,215,868 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha298,489,359 - 8,527,888 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0298,248,236 - 8,286,775 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl298,248,495 - 8,286,727 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1298,265,711 - 8,304,249 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0298,391,268 - 8,430,020 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0298,670,438 - 8,708,972 (-)NCBIUU_Cfam_GSD_1.0
Bpnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,263,529 - 71,285,901 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364963,500,303 - 3,521,673 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364963,498,534 - 3,521,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,962,686 - 52,999,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,968,532 - 52,998,996 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603988,779,510 - 88,815,872 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bpnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248862,983,121 - 3,005,596 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248862,983,077 - 3,005,596 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BPNT2
441 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000047997   ⟹   ENSSSCP00000041117
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl475,191,257 - 75,215,906 (+)Ensembl
RefSeq Acc Id: NM_001243632   ⟹   NP_001230561
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1475,191,256 - 75,210,988 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001230561   ⟸   NM_001243632
- UniProtKB: F1RT67 (UniProtKB/Swiss-Prot),   A0A480TJZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041117   ⟸   ENSSSCT00000047997


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032846 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015060402 UniProtKB/Swiss-Prot
  ENSSSCG00025023245 UniProtKB/Swiss-Prot
  ENSSSCG00030043195 UniProtKB/Swiss-Prot
  ENSSSCG00035043150 UniProtKB/Swiss-Prot
  ENSSSCG00040022038 UniProtKB/Swiss-Prot
  ENSSSCG00045019989 UniProtKB/Swiss-Prot
  ENSSSCG00050052949 UniProtKB/Swiss-Prot
  ENSSSCG00055025239 UniProtKB/Swiss-Prot
  ENSSSCG00060061949 UniProtKB/Swiss-Prot
  ENSSSCG00065036885 UniProtKB/Swiss-Prot
  ENSSSCG00070003183 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000047997 ENTREZGENE
  ENSSSCT00000047997.3 UniProtKB/Swiss-Prot
  ENSSSCT00015080712.1 UniProtKB/Swiss-Prot
  ENSSSCT00025031505.1 UniProtKB/Swiss-Prot
  ENSSSCT00030060210.1 UniProtKB/Swiss-Prot
  ENSSSCT00035057333.1 UniProtKB/Swiss-Prot
  ENSSSCT00040029549.1 UniProtKB/Swiss-Prot
  ENSSSCT00045034080.1 UniProtKB/Swiss-Prot
  ENSSSCT00050072099.1 UniProtKB/Swiss-Prot
  ENSSSCT00055049864.1 UniProtKB/Swiss-Prot
  ENSSSCT00060084515.1 UniProtKB/Swiss-Prot
  ENSSSCT00065050314.1 UniProtKB/Swiss-Prot
  ENSSSCT00070006115.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.190.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fructose-1,6-Bisphosphatase, subunit A, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Inositol_monophosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Inositol_monophosphatase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100156925 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene IMPAD1 ENTREZGENE
PANTHER 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLGI-RESIDENT ADENOSINE 3',5'-BISPHOSPHATE 3'-PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Inositol_P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Carbohydrate phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480TJZ2 ENTREZGENE, UniProtKB/TrEMBL
  F1RT67 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:98737 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 BPNT2  3'(2'), 5'-bisphosphate nucleotidase 2  IMPAD1  inositol monophosphatase domain containing 1  Symbol and/or name change 5135510 APPROVED