COL6A2 (collagen type VI alpha 2 chain) - Rat Genome Database
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Gene: COL6A2 (collagen type VI alpha 2 chain) Sus scrofa
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Symbol: COL6A2
Name: collagen type VI alpha 2 chain
RGD ID: 14116999
Description: ENCODES a protein that exhibits collagen binding (inferred); INVOLVED IN response to glucose (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); Bethlem myopathy (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); sarcolemma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: collagen alpha-2(VI) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,600,867 - 218,616,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
COL6A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,600,867 - 218,616,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL6A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2146,098,097 - 46,132,849 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2146,098,112 - 46,132,848 (+)EnsemblGRCh38hg38GRCh38
GRCh382146,098,071 - 46,132,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372147,518,026 - 47,552,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,342,461 - 46,377,191 (+)NCBINCBI36hg18NCBI36
Build 342146,342,469 - 46,374,147NCBI
Celera2132,629,797 - 32,665,343 (+)NCBI
Cytogenetic Map21q22.3NCBI
HuRef2132,899,133 - 32,933,853 (+)NCBIHuRef
CHM1_12147,078,809 - 47,113,491 (+)NCBICHM1_1
Col6a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,431,590 - 76,459,464 (-)NCBIGRCm39mm39
GRCm39 Ensembl1076,431,596 - 76,459,464 (-)Ensembl
GRCm381076,595,756 - 76,623,630 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,595,762 - 76,623,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,058,501 - 76,086,149 (-)NCBIGRCm37mm9NCBIm37
MGSCv361076,039,478 - 76,067,030 (-)NCBImm8
Celera1077,640,875 - 77,668,353 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.32NCBI
Col6a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22012,021,676 - 12,049,425 (+)NCBI
Rnor_6.0 Ensembl2012,773,427 - 12,801,180 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02012,773,472 - 12,801,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02014,931,484 - 14,959,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,436,783 - 12,464,512 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12012,445,140 - 12,461,566 (+)NCBI
Celera2013,520,111 - 13,547,903 (+)NCBICelera
Cytogenetic Map20p12NCBI
Col6a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,575,170 - 42,600,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,575,677 - 42,600,967 (+)NCBIChiLan1.0ChiLan1.0
COL6A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12145,696,865 - 45,731,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,710,491 - 45,730,895 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02132,442,859 - 32,478,076 (+)NCBIMhudiblu_PPA_v0panPan3
Col6a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936778394,985 - 430,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL6A2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,724,355 - 89,758,389 (+)NCBI
ChlSab1.1 Ensembl289,737,003 - 89,758,425 (+)Ensembl
Col6a2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474531,246,458 - 31,272,403 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 4 4 2 3
Low 5 3 1 19 2 1
Below cutoff 4

Sequence


Protein Sequences
Protein RefSeqs XP_020938158 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE93250 (Get FASTA)   NCBI Sequence Viewer  
  BAE93251 (Get FASTA)   NCBI Sequence Viewer  
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028022 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000026262 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023788 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene COL6A2 ENTREZGENE
Pfam VWA UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt I3LQ84_PIG UniProtKB/TrEMBL
  Q1T7A6_PIG UniProtKB/TrEMBL
  Q1T7A7_PIG UniProtKB/TrEMBL