DNTTIP1 (deoxynucleotidyltransferase terminal interacting protein 1) - Rat Genome Database

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Gene: DNTTIP1 (deoxynucleotidyltransferase terminal interacting protein 1) Sus scrofa
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Symbol: DNTTIP1
Name: deoxynucleotidyltransferase terminal interacting protein 1
RGD ID: 14114808
Description: ENCODES a protein that exhibits DNA binding (inferred); nucleosome binding (inferred); protein homodimerization activity (inferred); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN chromosome (inferred); histone deacetylase complex (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deoxynucleotidyltransferase terminal-interacting protein 1; terminal deoxynucleotidyltransferase interacting factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,994,656 - 48,017,560 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,994,658 - 48,017,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,640,719 - 53,663,631 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DNTTIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,994,656 - 48,017,560 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,994,658 - 48,017,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,640,719 - 53,663,631 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNTTIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,791,954 - 45,811,418 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,791,954 - 45,811,427 (+)EnsemblGRCh38hg38GRCh38
GRCh372044,420,593 - 44,440,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,853,983 - 43,873,473 (+)NCBINCBI36Build 36hg18NCBI36
Build 342043,853,982 - 43,873,471NCBI
Celera2041,131,070 - 41,150,565 (+)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,162,380 - 41,181,840 (+)NCBIHuRef
CHM1_12044,323,274 - 44,343,207 (+)NCBICHM1_1
T2T-CHM13v2.02047,528,482 - 47,547,915 (+)NCBIT2T-CHM13v2.0
Dnttip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,587,935 - 164,610,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,587,903 - 164,610,527 (+)EnsemblGRCm39 Ensembl
GRCm382164,746,015 - 164,768,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,745,983 - 164,768,607 (+)EnsemblGRCm38mm10GRCm38
MGSCv372164,571,515 - 164,593,720 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,437,220 - 164,459,425 (+)NCBIMGSCv36mm8
Celera2170,683,349 - 170,705,502 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Dnttip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,901,070 - 173,924,742 (+)NCBIGRCr8
mRatBN7.23153,481,718 - 153,505,403 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,481,705 - 153,505,759 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,290,440 - 157,314,102 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,789,410 - 165,813,072 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,533,187 - 163,556,849 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,212,156 - 161,235,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,212,156 - 161,236,121 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,398,358 - 167,421,351 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,775,294 - 155,799,124 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,690,031 - 155,705,145NCBI
Celera3152,089,738 - 152,113,159 (+)NCBICelera
Cytogenetic Map3q42NCBI
Dnttip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,479,582 - 11,501,008 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,479,582 - 11,501,008 (-)NCBIChiLan1.0ChiLan1.0
DNTTIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,534,132 - 51,553,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,527,237 - 51,546,683 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,131,601 - 42,151,047 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,219,079 - 43,238,243 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,219,079 - 43,238,243 (+)Ensemblpanpan1.1panPan2
DNTTIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,102,756 - 33,127,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,102,688 - 33,127,385 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,630,246 - 32,654,694 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,813,214 - 33,837,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,813,126 - 33,837,733 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,072,039 - 33,096,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,187,113 - 33,211,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,726,201 - 33,750,713 (+)NCBIUU_Cfam_GSD_1.0
Dnttip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,755,448 - 191,778,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,207,441 - 7,232,256 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,209,091 - 7,231,996 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNTTIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,074,766 - 18,098,147 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,074,767 - 18,098,108 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,715,129 - 66,738,975 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnttip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,761,075 - 8,789,711 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,761,077 - 8,789,728 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNTTIP1
896 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 4 3 4 2 23 2 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000008125   ⟹   ENSSSCP00000007909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,994,656 - 48,017,560 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066198   ⟹   ENSSSCP00000055251
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,994,675 - 48,017,561 (+)Ensembl
RefSeq Acc Id: XM_001928813   ⟹   XP_001928848
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11747,994,658 - 48,017,568 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001928848   ⟸   XM_001928813
- UniProtKB: F1SC86 (UniProtKB/TrEMBL),   A0A4X1U011 (UniProtKB/TrEMBL),   A0A287BGI8 (UniProtKB/TrEMBL),   A0A4X1U086 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000055251   ⟸   ENSSSCT00000066198
RefSeq Acc Id: ENSSSCP00000007909   ⟸   ENSSSCT00000008125

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007422 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015057145 UniProtKB/TrEMBL
  ENSSSCG00025064551 UniProtKB/TrEMBL
  ENSSSCG00030056841 UniProtKB/TrEMBL
  ENSSSCG00035065575 UniProtKB/TrEMBL
  ENSSSCG00040023870 UniProtKB/TrEMBL
  ENSSSCG00045003453 UniProtKB/TrEMBL
  ENSSSCG00050069682 UniProtKB/TrEMBL
  ENSSSCG00055013121 UniProtKB/TrEMBL
  ENSSSCG00060034500 UniProtKB/TrEMBL
  ENSSSCG00065000549 UniProtKB/TrEMBL
  ENSSSCG00070013114 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008125 ENTREZGENE
  ENSSSCT00000008125.5 UniProtKB/TrEMBL
  ENSSSCT00015076129.1 UniProtKB/TrEMBL
  ENSSSCT00015076163.1 UniProtKB/TrEMBL
  ENSSSCT00015076399.1 UniProtKB/TrEMBL
  ENSSSCT00015076662.1 UniProtKB/TrEMBL
  ENSSSCT00025088523.1 UniProtKB/TrEMBL
  ENSSSCT00030079254.1 UniProtKB/TrEMBL
  ENSSSCT00035088319.1 UniProtKB/TrEMBL
  ENSSSCT00040031951.1 UniProtKB/TrEMBL
  ENSSSCT00045005638.1 UniProtKB/TrEMBL
  ENSSSCT00050095026.1 UniProtKB/TrEMBL
  ENSSSCT00055025813.1 UniProtKB/TrEMBL
  ENSSSCT00060046767.1 UniProtKB/TrEMBL
  ENSSSCT00060046771.1 UniProtKB/TrEMBL
  ENSSSCT00065000629.1 UniProtKB/TrEMBL
  ENSSSCT00070025558.1 UniProtKB/TrEMBL
  ENSSSCT00070025567.1 UniProtKB/TrEMBL
  ENSSSCT00070025578.1 UniProtKB/TrEMBL
InterPro DNTTIP1_dimer UniProtKB/TrEMBL
  TdIF1 UniProtKB/TrEMBL
  TdIF1_C UniProtKB/TrEMBL
KEGG Report ssc:100154389 UniProtKB/TrEMBL
NCBI Gene DNTTIP1 ENTREZGENE
PANTHER DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23399 UniProtKB/TrEMBL
Pfam DNTTIP1_dimer UniProtKB/TrEMBL
  TdIF1_2nd UniProtKB/TrEMBL
UniProt A0A287BGI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U011 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U086 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U096_PIG UniProtKB/TrEMBL
  F1SC86 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95762 ENTREZGENE