MCM3AP (minichromosome maintenance complex component 3 associated protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MCM3AP (minichromosome maintenance complex component 3 associated protein) Sus scrofa
Analyze
Symbol: MCM3AP
Name: minichromosome maintenance complex component 3 associated protein
RGD ID: 14114016
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone acetyltransferase activity (inferred); histone binding (inferred); INVOLVED IN mRNA export from nucleus (inferred); nucleosome organization (inferred); poly(A)+ mRNA export from nucleus (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Autosomal Recessive Peripheral Neuropathy with or without Impaired Intellectual Development (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nuclear membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: germinal-center associated nuclear protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,446,950 - 218,493,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MCM3AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,446,950 - 218,493,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCM3AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382146,235,133 - 46,286,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2146,235,133 - 46,286,297 (-)EnsemblGRCh38hg38GRCh38
GRCh372147,655,047 - 47,705,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,479,476 - 46,529,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 342146,479,475 - 46,529,664NCBI
Celera2132,767,449 - 32,817,670 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2133,037,280 - 33,088,397 (-)NCBIHuRef
CHM1_12147,215,882 - 47,266,181 (-)NCBICHM1_1
T2T-CHM13v2.02144,617,688 - 44,668,894 (-)NCBIT2T-CHM13v2.0
Mcm3ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,304,736 - 76,351,693 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,304,761 - 76,351,691 (+)EnsemblGRCm39 Ensembl
GRCm381076,468,902 - 76,515,859 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,468,927 - 76,515,857 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,931,716 - 75,978,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,912,654 - 75,959,575 (+)NCBIMGSCv36mm8
Celera1077,513,360 - 77,560,247 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.88NCBI
Mcm3ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,127,060 - 12,164,651 (-)NCBIGRCr8
mRatBN7.22012,127,570 - 12,165,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,127,570 - 12,165,165 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2012,823,204 - 12,860,669 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,184,127 - 12,221,592 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02012,655,905 - 12,693,371 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02012,879,304 - 12,917,069 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,879,278 - 12,917,039 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,036,956 - 15,075,033 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,543,442 - 12,580,796 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12012,543,800 - 12,581,101 (-)NCBI
Celera2013,625,646 - 13,663,007 (-)NCBICelera
Cytogenetic Map20p12NCBI
Mcm3ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,657,588 - 42,705,315 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,657,422 - 42,706,339 (-)NCBIChiLan1.0ChiLan1.0
MCM3AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22242,334,031 - 42,385,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12137,207,022 - 37,258,643 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02132,577,539 - 32,629,060 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12145,828,365 - 45,878,100 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,828,554 - 45,878,100 (-)Ensemblpanpan1.1panPan2
MCM3AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13139,507,714 - 39,559,855 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3139,507,729 - 39,561,674 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3138,735,529 - 38,787,803 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03139,148,839 - 39,201,166 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3139,148,851 - 39,201,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13139,010,523 - 39,062,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03138,970,757 - 39,023,101 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03139,489,405 - 39,541,541 (-)NCBIUU_Cfam_GSD_1.0
Mcm3ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,812,053 - 38,856,770 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936778273,909 - 319,232 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936778273,152 - 318,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCM3AP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,852,450 - 89,900,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,852,447 - 89,890,054 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605418,237,793 - 18,291,577 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcm3ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474531,325,526 - 31,375,368 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474531,328,802 - 31,376,173 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1 1 1
Low 9 4 3 3 2 22 1 2 3
Below cutoff

Sequence


Protein Domains
PCI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026344 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025021237 UniProtKB/TrEMBL
  ENSSSCG00055024289 UniProtKB/TrEMBL
  ENSSSCG00060059796 UniProtKB/TrEMBL
  ENSSSCG00065030175 UniProtKB/TrEMBL
  ENSSSCG00070006187 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029980 ENTREZGENE
  ENSSSCT00000029980.4 UniProtKB/TrEMBL
  ENSSSCT00000098011 ENTREZGENE
  ENSSSCT00000098011.1 UniProtKB/TrEMBL
  ENSSSCT00000103325.1 UniProtKB/TrEMBL
  ENSSSCT00025028861.1 UniProtKB/TrEMBL
  ENSSSCT00025028946.1 UniProtKB/TrEMBL
  ENSSSCT00055047828.1 UniProtKB/TrEMBL
  ENSSSCT00060081574.1 UniProtKB/TrEMBL
  ENSSSCT00065040721.1 UniProtKB/TrEMBL
  ENSSSCT00070011794.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.990 UniProtKB/TrEMBL
  6.10.250.1340 UniProtKB/TrEMBL
InterPro GANP_CID_dom UniProtKB/TrEMBL
  MCM3AP_GANP UniProtKB/TrEMBL
  MCM3AP_RRM UniProtKB/TrEMBL
  NupH_GANP UniProtKB/TrEMBL
  PCI_dom UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  SAC3/GANP/THP3 UniProtKB/TrEMBL
  SAC3/GANP/THP3 UniProtKB/TrEMBL
NCBI Gene MCM3AP ENTREZGENE
PANTHER GERMINAL-CENTER ASSOCIATED NUCLEAR PROTEIN UniProtKB/TrEMBL
  PTHR12436 UniProtKB/TrEMBL
Pfam CID_GANP UniProtKB/TrEMBL
  MCM3AP_GANP UniProtKB/TrEMBL
  NupH_GANP UniProtKB/TrEMBL
  SAC3_GANP UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A480SRR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T3X4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RFK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RU17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W6I5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7Y4_PIG UniProtKB/TrEMBL
  A0A8W4F970_PIG UniProtKB/TrEMBL
  I3LCF4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96414 ENTREZGENE