VWC2 (von Willebrand factor C domain containing 2) - Rat Genome Database

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Gene: VWC2 (von Willebrand factor C domain containing 2) Sus scrofa
Analyze
Symbol: VWC2
Name: von Willebrand factor C domain containing 2
RGD ID: 14113364
Description: INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); positive regulation of neuron differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); interstitial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: brorin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9135,982,227 - 136,083,616 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19135,982,814 - 136,083,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29149,507,786 - 149,609,257 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VWC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9135,982,227 - 136,083,616 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19135,982,814 - 136,083,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29149,507,786 - 149,609,257 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VWC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38749,773,638 - 49,922,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl749,773,638 - 49,921,950 (+)EnsemblGRCh38hg38GRCh38
GRCh37749,813,234 - 49,961,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36749,783,803 - 49,922,684 (+)NCBINCBI36Build 36hg18NCBI36
Celera749,907,441 - 50,046,308 (+)NCBICelera
Cytogenetic Map7p12.2NCBI
HuRef749,694,094 - 49,833,168 (+)NCBIHuRef
CHM1_1749,815,530 - 49,954,428 (+)NCBICHM1_1
T2T-CHM13v2.0749,934,695 - 50,083,976 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2749,850,406 - 49,989,256 (+)NCBI
Vwc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391111,063,836 - 11,219,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1111,064,223 - 11,218,931 (+)EnsemblGRCm39 Ensembl
GRCm381111,113,868 - 11,269,295 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1111,114,223 - 11,268,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv371111,014,019 - 11,163,529 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,014,747 - 11,167,726 (+)NCBIMGSCv36mm8
Celera1111,572,129 - 11,719,075 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map116.27NCBI
Vwc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81489,897,543 - 90,038,732 (+)NCBIGRCr8
mRatBN7.21485,683,670 - 85,825,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1485,684,414 - 85,818,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1490,094,126 - 90,234,756 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01491,338,869 - 91,479,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01487,806,017 - 87,946,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01491,201,141 - 91,348,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1491,201,730 - 91,348,219 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01490,987,662 - 91,137,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1484,692,637 - 84,825,429 (+)NCBICelera
Cytogenetic Map14q21NCBI
Vwc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554563,951,428 - 4,075,624 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554563,949,885 - 4,075,622 (-)NCBIChiLan1.0ChiLan1.0
VWC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2654,649,664 - 54,800,128 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17102,974,392 - 103,124,851 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0750,412,363 - 50,562,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1750,661,384 - 50,810,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl750,661,384 - 50,800,814 (+)Ensemblpanpan1.1panPan2
VWC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,248,612 - 1,350,965 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl181,257,357 - 1,350,856 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha181,248,381 - 1,346,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,314,358 - 1,412,133 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,312,740 - 1,408,185 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,289,016 - 1,386,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,285,780 - 1,383,481 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,421,893 - 1,519,636 (+)NCBIUU_Cfam_GSD_1.0
Vwc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118104,506,578 - 104,681,083 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366861,861,537 - 2,015,255 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366861,844,435 - 2,016,953 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,876,382 - 9,027,007 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,885,377 - 9,025,229 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606213,227,901 - 13,385,430 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247404,109,100 - 4,234,009 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247404,100,196 - 4,234,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VWC2
5339 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system
High
Medium
Low 3 20
Below cutoff 3

Sequence


RefSeq Acc Id: ENSSSCT00000055494   ⟹   ENSSSCP00000057862
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9135,982,227 - 136,083,616 (+)Ensembl
RefSeq Acc Id: XM_021063907   ⟹   XP_020919566
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19135,982,814 - 136,083,069 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020919566   ⟸   XM_021063907
- UniProtKB: A0A8D1Q7Q0 (UniProtKB/TrEMBL),   F1SF29 (UniProtKB/TrEMBL),   A0A4X1TA57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057862   ⟸   ENSSSCT00000055494
Protein Domains
VWFC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015626 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025017925 UniProtKB/TrEMBL
  ENSSSCG00030014973 UniProtKB/TrEMBL
  ENSSSCG00035077173 UniProtKB/TrEMBL
  ENSSSCG00040066527 UniProtKB/TrEMBL
  ENSSSCG00045009773 UniProtKB/TrEMBL
  ENSSSCG00050058522 UniProtKB/TrEMBL
  ENSSSCG00055009757 UniProtKB/TrEMBL
  ENSSSCG00060036557 UniProtKB/TrEMBL
  ENSSSCG00065032444 UniProtKB/TrEMBL
  ENSSSCG00070008092 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055494 ENTREZGENE
  ENSSSCT00000055494.3 UniProtKB/TrEMBL
  ENSSSCT00025024319.1 UniProtKB/TrEMBL
  ENSSSCT00030020664.1 UniProtKB/TrEMBL
  ENSSSCT00035105071.1 UniProtKB/TrEMBL
  ENSSSCT00040090858.1 UniProtKB/TrEMBL
  ENSSSCT00045016518.1 UniProtKB/TrEMBL
  ENSSSCT00050079772.1 UniProtKB/TrEMBL
  ENSSSCT00055019055.1 UniProtKB/TrEMBL
  ENSSSCT00060049518.1 UniProtKB/TrEMBL
  ENSSSCT00065043967.1 UniProtKB/TrEMBL
  ENSSSCT00070015657.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.200.20 UniProtKB/TrEMBL
InterPro VWC2/VWC2L UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
NCBI Gene VWC2 ENTREZGENE
PANTHER BRORIN UniProtKB/TrEMBL
  PTHR46252 UniProtKB/TrEMBL
Pfam VWC UniProtKB/TrEMBL
PROSITE VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
SMART VWC UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
UniProt A0A4X1TA57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q7Q0 ENTREZGENE, UniProtKB/TrEMBL
  F1SF29 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94887 ENTREZGENE