C3H7orf50 (chromosome 3 C7orf50 homolog) - Rat Genome Database

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Gene: C3H7orf50 (chromosome 3 C7orf50 homolog) Sus scrofa
Analyze
Symbol: C3H7orf50 (Ensembl: C7orf50)
Name: chromosome 3 C7orf50 homolog
RGD ID: 14112746
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C7orf50 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3650,704 - 662,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13650,701 - 745,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23731,461 - 743,076 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
C3H7orf50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3650,704 - 662,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13650,701 - 745,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23731,461 - 743,076 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C7orf50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387977,964 - 1,138,257 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7996,986 - 1,138,260 (-)EnsemblGRCh38hg38GRCh38
GRCh3771,017,600 - 1,177,893 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3671,003,168 - 1,144,360 (-)NCBINCBI36Build 36hg18NCBI36
Celera71,004,263 - 1,143,944 (-)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7953,334 - 1,091,254 (-)NCBIHuRef
CHM1_171,035,534 - 1,175,875 (-)NCBICHM1_1
T2T-CHM13v2.071,082,961 - 1,240,814 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v271,091,227 - 1,231,128 (-)NCBI
3110082I17Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,345,494 - 139,446,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,345,494 - 139,446,282 (-)EnsemblGRCm39 Ensembl
GRCm385139,359,739 - 139,460,534 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,359,739 - 139,460,527 (-)EnsemblGRCm38mm10GRCm38
MGSCv375139,835,693 - 139,936,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,613,382 - 139,714,155 (-)NCBIMGSCv36mm8
Celera5136,413,785 - 136,514,787 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.45NCBI
C12h7orf50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,298,968 - 20,402,890 (+)NCBIGRCr8
mRatBN7.21215,185,728 - 15,289,042 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,185,707 - 15,289,069 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,995,844 - 16,099,055 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,619,589 - 16,722,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,645,952 - 15,749,008 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,277,635 - 17,380,497 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,277,635 - 17,380,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,264,599 - 19,367,360 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,686,414 - 15,789,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1216,939,573 - 17,043,009 (+)NCBICelera
Cytogenetic Map12q11NCBI
LOC102015813
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,712,187 - 8,839,187 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,714,109 - 8,839,162 (-)NCBIChiLan1.0ChiLan1.0
C6H7orf50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,944,233 - 6,086,474 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1754,268,922 - 54,411,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v071,156,770 - 1,383,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.171,368,898 - 1,505,516 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl71,369,532 - 1,497,518 (-)Ensemblpanpan1.1panPan2
C6H7orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,749,123 - 15,896,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,222,258 - 17,369,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0615,880,112 - 16,027,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl615,879,280 - 16,036,123 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1615,682,358 - 15,830,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,609,505 - 15,756,571 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0615,896,874 - 16,044,771 (+)NCBIUU_Cfam_GSD_1.0
CUNH7orf50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,677,790 - 143,796,404 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367541,214,480 - 1,324,497 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367541,213,948 - 1,332,534 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH7orf50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12820,452,734 - 20,575,087 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2820,452,748 - 20,575,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660901,117,989 - 1,245,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH7orf50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474026,549,264 - 26,662,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474026,552,102 - 26,671,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C3H7orf50
3529 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 22 2 3 3
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000042783   ⟹   ENSSSCP00000039771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3648,140 - 737,368 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085913   ⟹   ENSSSCP00000072568
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3650,704 - 662,486 (-)Ensembl
RefSeq Acc Id: XM_013987679   ⟹   XP_013843133
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13650,701 - 745,370 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013843133   ⟸   XM_013987679
- UniProtKB: A0A4X1THM9 (UniProtKB/TrEMBL),   A0A8D1GW94 (UniProtKB/TrEMBL),   A0A8D1Q0G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039771   ⟸   ENSSSCT00000042783
RefSeq Acc Id: ENSSSCP00000072568   ⟸   ENSSSCT00000085913
Protein Domains
WKF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038777 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015072354 UniProtKB/TrEMBL
  ENSSSCG00025001696 UniProtKB/TrEMBL
  ENSSSCG00030061724 UniProtKB/TrEMBL
  ENSSSCG00035039069 UniProtKB/TrEMBL
  ENSSSCG00040010334 UniProtKB/TrEMBL
  ENSSSCG00045008652 UniProtKB/TrEMBL
  ENSSSCG00055007729 UniProtKB/TrEMBL
  ENSSSCG00060020591 UniProtKB/TrEMBL
  ENSSSCG00065050539 UniProtKB/TrEMBL
  ENSSSCG00070009542 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000085913.2 UniProtKB/TrEMBL
  ENSSSCT00015097058.1 UniProtKB/TrEMBL
  ENSSSCT00025002119.1 UniProtKB/TrEMBL
  ENSSSCT00025002131.1 UniProtKB/TrEMBL
  ENSSSCT00030086253.1 UniProtKB/TrEMBL
  ENSSSCT00030086268.1 UniProtKB/TrEMBL
  ENSSSCT00030086282.1 UniProtKB/TrEMBL
  ENSSSCT00035051866.1 UniProtKB/TrEMBL
  ENSSSCT00035051875.1 UniProtKB/TrEMBL
  ENSSSCT00035051878.1 UniProtKB/TrEMBL
  ENSSSCT00040013376.1 UniProtKB/TrEMBL
  ENSSSCT00040013416.1 UniProtKB/TrEMBL
  ENSSSCT00040013448.1 UniProtKB/TrEMBL
  ENSSSCT00045014594.1 UniProtKB/TrEMBL
  ENSSSCT00045014626.1 UniProtKB/TrEMBL
  ENSSSCT00045014651.1 UniProtKB/TrEMBL
  ENSSSCT00045014687.1 UniProtKB/TrEMBL
  ENSSSCT00055015096.1 UniProtKB/TrEMBL
  ENSSSCT00055015128.1 UniProtKB/TrEMBL
  ENSSSCT00055015161.1 UniProtKB/TrEMBL
  ENSSSCT00060027896.1 UniProtKB/TrEMBL
  ENSSSCT00060027897.1 UniProtKB/TrEMBL
  ENSSSCT00060027899.1 UniProtKB/TrEMBL
  ENSSSCT00065069226.1 UniProtKB/TrEMBL
  ENSSSCT00065069228.1 UniProtKB/TrEMBL
  ENSSSCT00070018506.1 UniProtKB/TrEMBL
InterPro DUF2373 UniProtKB/TrEMBL
KEGG Report ssc:100522484 UniProtKB/TrEMBL
NCBI Gene C3H7orf50 ENTREZGENE
PANTHER UNCHARACTERIZED UniProtKB/TrEMBL
  ZMP:0000000624 UniProtKB/TrEMBL
Pfam DUF2373 UniProtKB/TrEMBL
UniProt A0A4X1THM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R8C4_PIG UniProtKB/TrEMBL
  A0A8D0XUX5_PIG UniProtKB/TrEMBL
  A0A8D0ZRN5_PIG UniProtKB/TrEMBL
  A0A8D0ZS86_PIG UniProtKB/TrEMBL
  A0A8D1DCV7_PIG UniProtKB/TrEMBL
  A0A8D1DCW7_PIG UniProtKB/TrEMBL
  A0A8D1DD11_PIG UniProtKB/TrEMBL
  A0A8D1GW94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q0G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UNA9_PIG UniProtKB/TrEMBL
  A0A8D1UNF5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86027 ENTREZGENE