SPRYD7 (SPRY domain containing 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SPRYD7 (SPRY domain containing 7) Sus scrofa
Analyze
Symbol: SPRYD7
Name: SPRY domain containing 7
RGD ID: 14112051
Description: ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: SPRY domain-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1117,848,852 - 17,872,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11117,849,011 - 17,870,090 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,186,983 - 18,208,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:15679890   PMID:22301074  


Genomics

Comparative Map Data
SPRYD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1117,848,852 - 17,872,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11117,849,011 - 17,870,090 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,186,983 - 18,208,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPRYD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,912,702 - 49,936,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,912,702 - 49,936,490 (-)EnsemblGRCh38hg38GRCh38
GRCh371350,486,838 - 50,510,476 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,384,843 - 49,408,477 (-)NCBINCBI36Build 36hg18NCBI36
Build 341349,384,842 - 49,408,477NCBI
Celera1331,541,570 - 31,565,352 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1331,280,759 - 31,304,881 (-)NCBIHuRef
CHM1_11350,454,546 - 50,478,329 (-)NCBICHM1_1
T2T-CHM13v2.01349,133,330 - 49,156,970 (-)NCBIT2T-CHM13v2.0
Spryd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,769,300 - 61,794,335 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,769,442 - 61,794,335 (-)EnsemblGRCm39 Ensembl
GRCm381461,531,851 - 61,556,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1461,531,993 - 61,556,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv371462,153,142 - 62,175,723 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361460,488,415 - 60,510,996 (-)NCBIMGSCv36mm8
Celera1459,301,831 - 59,324,417 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.05NCBI
Spryd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,883,237 - 39,903,770 (-)NCBIGRCr8
mRatBN7.21535,707,185 - 35,727,704 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,707,060 - 35,727,509 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1537,572,038 - 37,592,361 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,722,665 - 38,742,988 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01537,167,870 - 37,188,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,871,144 - 41,890,879 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,870,762 - 41,890,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01545,673,595 - 45,693,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41540,683,644 - 40,703,967 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11540,699,344 - 40,719,667 (-)NCBI
Celera1535,403,400 - 35,423,722 (-)NCBICelera
Cytogenetic Map15p12NCBI
Spryd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554313,303,091 - 3,324,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554313,303,091 - 3,330,360 (-)NCBIChiLan1.0ChiLan1.0
SPRYD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21451,356,242 - 51,379,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11350,007,503 - 50,030,983 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01331,053,278 - 31,076,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,801,309 - 49,824,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,801,309 - 49,824,463 (-)Ensemblpanpan1.1panPan2
SPRYD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,929,814 - 1,947,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,849,634 - 1,945,276 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha221,958,685 - 1,976,702 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,919,587 - 1,937,225 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,919,291 - 1,937,221 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1221,829,191 - 1,847,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0221,878,466 - 1,896,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0221,896,811 - 1,914,827 (+)NCBIUU_Cfam_GSD_1.0
Spryd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,427,470 - 159,455,104 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,908,169 - 2,939,232 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,911,523 - 2,939,151 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPRYD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,832,306 - 27,890,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605716,032,762 - 16,051,987 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spryd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247484,766,113 - 4,788,061 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPRYD7
783 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1 19 2
Low 8 4 2 5 1 4 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010289   ⟹   ENSSSCP00000010021
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1117,848,984 - 17,866,762 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043570   ⟹   ENSSSCP00000054765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1117,848,852 - 17,872,257 (+)Ensembl
RefSeq Acc Id: NM_001243529   ⟹   NP_001230458
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11117,849,011 - 17,870,090 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001230458   ⟸   NM_001243529
- UniProtKB: A0A480UDV8 (UniProtKB/TrEMBL),   A0A4X1SLS1 (UniProtKB/TrEMBL),   A0A8D0K916 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010021   ⟸   ENSSSCT00000010289
RefSeq Acc Id: ENSSSCP00000054765   ⟸   ENSSSCT00000043570
Protein Domains
B30.2/SPRY   SPRY


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009390 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005035086 UniProtKB/TrEMBL
  ENSSSCG00015061452 UniProtKB/TrEMBL
  ENSSSCG00025065389 UniProtKB/TrEMBL
  ENSSSCG00030054914 UniProtKB/TrEMBL
  ENSSSCG00035017608 UniProtKB/TrEMBL
  ENSSSCG00045017303 UniProtKB/TrEMBL
  ENSSSCG00050056794 UniProtKB/TrEMBL
  ENSSSCG00055003864 UniProtKB/TrEMBL
  ENSSSCG00060017697 UniProtKB/TrEMBL
  ENSSSCG00065034238 UniProtKB/TrEMBL
  ENSSSCG00070002188 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010289.4 UniProtKB/TrEMBL
  ENSSSCT00000043570 ENTREZGENE
  ENSSSCT00000043570.2 UniProtKB/TrEMBL
  ENSSSCT00005056069.1 UniProtKB/TrEMBL
  ENSSSCT00015082153.1 UniProtKB/TrEMBL
  ENSSSCT00015082341.1 UniProtKB/TrEMBL
  ENSSSCT00015082520.1 UniProtKB/TrEMBL
  ENSSSCT00015082804.1 UniProtKB/TrEMBL
  ENSSSCT00015082860.1 UniProtKB/TrEMBL
  ENSSSCT00015082950.1 UniProtKB/TrEMBL
  ENSSSCT00025089736.1 UniProtKB/TrEMBL
  ENSSSCT00025089850.1 UniProtKB/TrEMBL
  ENSSSCT00025089922.1 UniProtKB/TrEMBL
  ENSSSCT00030076527.1 UniProtKB/TrEMBL
  ENSSSCT00030076553.1 UniProtKB/TrEMBL
  ENSSSCT00030076582.1 UniProtKB/TrEMBL
  ENSSSCT00030076597.1 UniProtKB/TrEMBL
  ENSSSCT00035022640.1 UniProtKB/TrEMBL
  ENSSSCT00035022643.1 UniProtKB/TrEMBL
  ENSSSCT00035022644.1 UniProtKB/TrEMBL
  ENSSSCT00045029443.1 UniProtKB/TrEMBL
  ENSSSCT00045029489.1 UniProtKB/TrEMBL
  ENSSSCT00045029554.1 UniProtKB/TrEMBL
  ENSSSCT00045029587.1 UniProtKB/TrEMBL
  ENSSSCT00050077425.1 UniProtKB/TrEMBL
  ENSSSCT00050077434.1 UniProtKB/TrEMBL
  ENSSSCT00050077438.1 UniProtKB/TrEMBL
  ENSSSCT00050077445.1 UniProtKB/TrEMBL
  ENSSSCT00055007577.1 UniProtKB/TrEMBL
  ENSSSCT00055007584.1 UniProtKB/TrEMBL
  ENSSSCT00055007591.1 UniProtKB/TrEMBL
  ENSSSCT00055007598.1 UniProtKB/TrEMBL
  ENSSSCT00060023718.1 UniProtKB/TrEMBL
  ENSSSCT00060023727.1 UniProtKB/TrEMBL
  ENSSSCT00060023740.1 UniProtKB/TrEMBL
  ENSSSCT00065046577.1 UniProtKB/TrEMBL
  ENSSSCT00065046582.1 UniProtKB/TrEMBL
  ENSSSCT00065046584.1 UniProtKB/TrEMBL
  ENSSSCT00070004085.1 UniProtKB/TrEMBL
  ENSSSCT00070004089.1 UniProtKB/TrEMBL
  ENSSSCT00070004095.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRYD7 UniProtKB/TrEMBL
KEGG Report ssc:100155063 UniProtKB/TrEMBL
NCBI Gene SPRYD7 ENTREZGENE
PANTHER PTHR20951 UniProtKB/TrEMBL
  SPRY DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
SMART SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A287BFB2_PIG UniProtKB/TrEMBL
  A0A480UDV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SLP0_PIG UniProtKB/TrEMBL
  A0A4X1SLP5_PIG UniProtKB/TrEMBL
  A0A4X1SLS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K916 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HKH2_PIG UniProtKB/TrEMBL
  A0A8D1T759_PIG UniProtKB/TrEMBL
  A0A8D1YH17_PIG UniProtKB/TrEMBL
  F1RK24_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93429 ENTREZGENE