PPT1 (palmitoyl-protein thioesterase 1) - Rat Genome Database

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Gene: PPT1 (palmitoyl-protein thioesterase 1) Sus scrofa
Analyze
Symbol: PPT1
Name: palmitoyl-protein thioesterase 1
RGD ID: 14110052
Description: ENCODES a protein that exhibits phospholipase A2 inhibitor activity (ortholog); INVOLVED IN protein depalmitoylation (ortholog); PARTICIPATES IN fatty acid elongation pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); congenital myopathy 1A (ortholog); COVID-19 (ortholog); FOUND IN neuronal cell body (ortholog); synaptic vesicle (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,840,908 - 95,860,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,840,906 - 95,860,858 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,280,518 - 89,300,475 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
PPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,840,908 - 95,860,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,840,906 - 95,860,858 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,280,518 - 89,300,475 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,071,461 - 40,097,252 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,072,710 - 40,097,260 (-)EnsemblGRCh38hg38GRCh38
GRCh37140,537,133 - 40,562,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,310,969 - 40,335,555 (-)NCBINCBI36Build 36hg18NCBI36
Build 34140,207,476 - 40,232,061NCBI
Celera138,820,669 - 38,845,442 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef138,656,433 - 38,681,192 (-)NCBIHuRef
CHM1_1140,653,983 - 40,678,773 (-)NCBICHM1_1
T2T-CHM13v2.0139,940,889 - 39,966,711 (-)NCBIT2T-CHM13v2.0
Ppt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,729,879 - 122,752,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4122,730,035 - 122,752,968 (+)EnsemblGRCm39 Ensembl
GRCm384122,836,077 - 122,859,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4122,836,242 - 122,859,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,513,485 - 122,536,418 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,338,558 - 122,360,685 (+)NCBIMGSCv36mm8
Celera4121,166,717 - 121,189,624 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.27NCBI
Ppt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,406,318 - 140,427,201 (+)NCBIGRCr8
mRatBN7.25135,121,164 - 135,142,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,121,163 - 135,142,048 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,827,992 - 137,847,852 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05139,598,471 - 139,618,368 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05139,605,087 - 139,624,952 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05140,538,260 - 140,558,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5140,538,260 - 140,558,162 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,329,263 - 144,349,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,153,498 - 142,173,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,158,725 - 142,179,598 (+)NCBI
Celera5133,659,813 - 133,679,711 (+)NCBICelera
RH 3.4 Map5890.0RGD
Cytogenetic Map5q36NCBI
Ppt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,529,115 - 17,549,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,518,345 - 17,549,112 (-)NCBIChiLan1.0ChiLan1.0
PPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,729,114 - 186,753,833 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11185,866,794 - 185,891,455 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,358,424 - 39,383,087 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,683,841 - 40,708,609 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,683,841 - 40,708,609 (-)Ensemblpanpan1.1panPan2
PPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,815,428 - 2,886,474 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,859,979 - 2,894,425 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,117,325 - 3,143,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,902,313 - 2,973,313 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,946,653 - 2,981,365 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,854,181 - 2,880,060 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,914,086 - 2,939,964 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,930,482 - 2,956,365 (+)NCBIUU_Cfam_GSD_1.0
Ppt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,056,908 - 56,081,782 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,881,712 - 21,906,569 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,881,692 - 21,906,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,809,373 - 92,833,048 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2092,809,552 - 92,833,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603324,006,277 - 24,030,955 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,543,857 - 22,577,121 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,542,892 - 22,577,077 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPT1
343 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000040146   ⟹   ENSSSCP00000049215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,840,909 - 95,860,836 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000077420   ⟹   ENSSSCP00000069657
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,840,908 - 95,856,267 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000084919   ⟹   ENSSSCP00000061607
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,842,174 - 95,860,858 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000095070   ⟹   ENSSSCP00000080583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,840,908 - 95,860,836 (-)Ensembl
RefSeq Acc Id: XM_003127823   ⟹   XP_003127871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1695,840,906 - 95,860,858 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003127871   ⟸   XM_003127823
- UniProtKB: A0A4X1VTR6 (UniProtKB/TrEMBL),   A0A480TS65 (UniProtKB/TrEMBL),   A0A8D0TJ95 (UniProtKB/TrEMBL),   A0A8D1MRV7 (UniProtKB/TrEMBL),   A0A8D1Q0U2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000049215   ⟸   ENSSSCT00000040146
Ensembl Acc Id: ENSSSCP00000061607   ⟸   ENSSSCT00000084919
Ensembl Acc Id: ENSSSCP00000069657   ⟸   ENSSSCT00000077420
Ensembl Acc Id: ENSSSCP00000080583   ⟸   ENSSSCT00000095070


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036673 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015001915 UniProtKB/TrEMBL
  ENSSSCG00025073784 UniProtKB/TrEMBL
  ENSSSCG00030065682 UniProtKB/TrEMBL
  ENSSSCG00035041319 UniProtKB/TrEMBL
  ENSSSCG00040072528 UniProtKB/TrEMBL
  ENSSSCG00045031742 UniProtKB/TrEMBL
  ENSSSCG00050049399 UniProtKB/TrEMBL
  ENSSSCG00055008856 UniProtKB/TrEMBL
  ENSSSCG00060057912 UniProtKB/TrEMBL
  ENSSSCG00065010594 UniProtKB/TrEMBL
  ENSSSCG00070026712 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040146.3 UniProtKB/TrEMBL
  ENSSSCT00000077420.2 UniProtKB/TrEMBL
  ENSSSCT00000084919.2 UniProtKB/TrEMBL
  ENSSSCT00000095070 ENTREZGENE
  ENSSSCT00000095070.1 UniProtKB/TrEMBL
  ENSSSCT00015002344.1 UniProtKB/TrEMBL
  ENSSSCT00025101576.1 UniProtKB/TrEMBL
  ENSSSCT00030091776.1 UniProtKB/TrEMBL
  ENSSSCT00035054907.1 UniProtKB/TrEMBL
  ENSSSCT00040099969.1 UniProtKB/TrEMBL
  ENSSSCT00045054274.1 UniProtKB/TrEMBL
  ENSSSCT00050067207.1 UniProtKB/TrEMBL
  ENSSSCT00055017349.1 UniProtKB/TrEMBL
  ENSSSCT00060078919.1 UniProtKB/TrEMBL
  ENSSSCT00065014068.1 UniProtKB/TrEMBL
  ENSSSCT00070053572.1 UniProtKB/TrEMBL
  ENSSSCT00070053573.1 UniProtKB/TrEMBL
  ENSSSCT00070053574.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Palm_thioest UniProtKB/TrEMBL
KEGG Report ssc:100517533 UniProtKB/TrEMBL
NCBI Gene PPT1 ENTREZGENE
PANTHER PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 UniProtKB/TrEMBL
  PTHR11247:SF8 UniProtKB/TrEMBL
Pfam Palm_thioest UniProtKB/TrEMBL
PRINTS PPTHIESTRASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A480TS65 ENTREZGENE
  A0A4X1VPD0_PIG UniProtKB/TrEMBL
  A0A4X1VTR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VUU3_PIG UniProtKB/TrEMBL
  A0A5G2QB02_PIG UniProtKB/TrEMBL
  A0A5G2QXQ8_PIG UniProtKB/TrEMBL
  A0A8D0TJ95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MRV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q0U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TYJ9_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287AYH9 UniProtKB/TrEMBL
  A0A480TS65 UniProtKB/TrEMBL
VGNC ID VGNC:91764 ENTREZGENE