CCDC71 (coiled-coil domain containing 71) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: CCDC71 (coiled-coil domain containing 71) Sus scrofa
Analyze
Symbol: CCDC71
Name: coiled-coil domain containing 71
RGD ID: 14107233
Description: INVOLVED IN cellular lipid metabolic process; positive regulation of fat cell differentiation; ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: coiled-coil domain-containing protein 71
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,767,492 - 31,771,218 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,763,802 - 31,771,260 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,998,036 - 35,001,786 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
CCDC71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,767,492 - 31,771,218 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,763,802 - 31,771,260 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,998,036 - 35,001,786 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,162,535 - 49,166,331 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,162,535 - 49,166,331 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,199,968 - 49,203,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,174,972 - 49,178,789 (-)NCBINCBI36hg18NCBI36
Celera349,157,127 - 49,161,007 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,257,779 - 49,261,595 (-)NCBIHuRef
CHM1_1349,152,733 - 49,156,550 (-)NCBICHM1_1
Ccdc71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,329,701 - 108,343,145 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,337,726 - 108,343,137 (+)Ensembl
GRCm389108,452,502 - 108,465,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,460,527 - 108,465,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,362,849 - 108,368,276 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,318,656 - 108,323,647 (+)NCBImm8
Celera9108,069,699 - 108,075,126 (+)NCBICelera
Cytogenetic Map9F2NCBI
Ccdc71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,146,650 - 109,161,749 (+)NCBI
Rnor_6.0 Ensembl8117,246,376 - 117,250,280 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,236,933 - 117,251,573 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,581,513 - 116,596,143 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,452,922 - 108,456,827 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
Ccdc71
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,150,321 - 1,154,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,150,053 - 1,153,965 (-)NCBIChiLan1.0ChiLan1.0
CCDC71
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,165,473 - 50,169,286 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0349,085,870 - 49,089,723 (-)NCBIMhudiblu_PPA_v0panPan3
CCDC71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2040,033,839 - 40,035,416 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12040,031,573 - 40,036,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ccdc71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529857,932 - 862,976 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC71
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Ccdc71
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,173,882 - 3,179,251 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012456   ⟹   ENSSSCP00000012131
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,767,492 - 31,771,218 (-)Ensembl
RefSeq Acc Id: XM_003132205   ⟹   XP_003132253
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,763,802 - 31,771,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005669536   ⟹   XP_005669593
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,763,802 - 31,771,260 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003132253 (Get FASTA)   NCBI Sequence Viewer  
  XP_005669593 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69669 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005669593   ⟸   XM_005669536
- UniProtKB: F1SPT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003132253   ⟸   XM_003132205
- UniProtKB: F1SPT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000012131   ⟸   ENSSSCT00000012456


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070004127 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012131 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070006370 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012456 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070007748 UniProtKB/TrEMBL
InterPro Ccdc71/71L UniProtKB/TrEMBL
KEGG Report ssc:100526185 UniProtKB/TrEMBL
NCBI Gene CCDC71 ENTREZGENE
PANTHER PTHR14484 UniProtKB/TrEMBL
Pfam CCDC71L UniProtKB/TrEMBL
UniProt A0A4X1STV9_PIG UniProtKB/TrEMBL
  F1SPT4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86311 ENTREZGENE