TMEM38A (transmembrane protein 38A) - Rat Genome Database
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Gene: TMEM38A (transmembrane protein 38A) Sus scrofa
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Symbol: TMEM38A
Name: transmembrane protein 38A
RGD ID: 14106754
Description: ENCODES a protein that exhibits identical protein binding (inferred); potassium channel activity (inferred); INVOLVED IN monovalent inorganic cation transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN integral component of membrane (inferred); nuclear membrane (inferred); sarcoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: trimeric intracellular cation channel type A
Orthologs:
Homo sapiens (human) : TMEM38A (transmembrane protein 38A)  HGNC  Alliance
Mus musculus (house mouse) : Tmem38a (transmembrane protein 38A)  MGI  Alliance
Rattus norvegicus (Norway rat) : Tmem38a (transmembrane protein 38a)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tmem38a (transmembrane protein 38A)
Pan paniscus (bonobo/pygmy chimpanzee) : TMEM38A (transmembrane protein 38A)
Canis lupus familiaris (dog) : TMEM38A (transmembrane protein 38A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tmem38a (transmembrane protein 38A)
Chlorocebus sabaeus (African green monkey) : TMEM38A (transmembrane protein 38A)
Heterocephalus glaber (naked mole-rat) : Tmem38a (transmembrane protein 38A)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,929,049 - 60,960,467 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,929,043 - 60,960,527 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,517,874 - 60,526,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM38A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,929,049 - 60,960,467 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,929,043 - 60,960,527 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,517,874 - 60,526,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM38A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1916,661,139 - 16,690,023 (+)EnsemblGRCh38hg38GRCh38
GRCh381916,661,139 - 16,690,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371916,771,938 - 16,799,830 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,632,938 - 16,660,830 (+)NCBINCBI36hg18NCBI36
Build 341916,632,937 - 16,660,814NCBI
Celera1916,673,777 - 16,701,673 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,340,650 - 16,368,543 (+)NCBIHuRef
CHM1_11916,771,437 - 16,799,383 (+)NCBICHM1_1
Tmem38a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,325,033 - 73,341,128 (+)NCBI
GRCm38872,571,189 - 72,587,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,572,055 - 72,587,282 (+)EnsemblGRCm38mm10GRCm38
MGSCv37875,096,002 - 75,111,183 (+)NCBIGRCm37mm9NCBIm37
MGSCv36875,501,092 - 75,516,273 (+)NCBImm8
Celera876,918,441 - 76,933,607 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
Tmem38a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01618,960,197 - 18,974,942 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1618,959,315 - 18,974,770 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,822,741 - 18,837,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,669,835 - 17,684,440 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11617,668,985 - 17,684,446 (-)NCBI
Celera1617,478,830 - 17,493,434 (-)NCBICelera
Cytogenetic Map16p14NCBI
Tmem38a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,132,111 - 1,144,380 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,132,111 - 1,144,335 (-)NCBIChiLan1.0ChiLan1.0
TMEM38A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,129,060 - 17,159,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,129,842 - 17,159,002 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,150,715 - 16,179,256 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM38A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,877,524 - 45,894,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,876,642 - 45,895,054 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tmem38a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,965,220 - 3,984,120 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM38A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl615,170,033 - 15,200,481 (+)Ensembl
ChlSab1.1615,169,143 - 15,200,372 (+)NCBI
Tmem38a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908837,753 - 849,972 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 2 8 2
Low 8 1 3 3 15 3
Below cutoff 1 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000056676   ⟹   ENSSSCP00000053847
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl260,929,049 - 60,960,467 (-)Ensembl
RefSeq Acc Id: XM_021083580   ⟹   XP_020939239
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1260,929,043 - 60,960,527 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020939239 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020939239   ⟸   XM_021083580
- Sequence:
RefSeq Acc Id: ENSSSCP00000053847   ⟸   ENSSSCT00000056676


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070019991 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000053847 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070033200 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000056676 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070039638 UniProtKB/TrEMBL
InterPro TRIC_channel UniProtKB/TrEMBL
NCBI Gene TMEM38A ENTREZGENE
PANTHER PTHR12454 UniProtKB/TrEMBL
Pfam TRIC UniProtKB/TrEMBL
UniGene Ssc.96656 ENTREZGENE
UniProt A0A4X1UWR6_PIG UniProtKB/TrEMBL
  F1S9V9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94174 ENTREZGENE