FKBP3 (FKBP prolyl isomerase 3) - Rat Genome Database

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Gene: FKBP3 (FKBP prolyl isomerase 3) Sus scrofa
Analyze
Symbol: FKBP3
Name: FKBP prolyl isomerase 3
RGD ID: 14105426
Description: ENCODES a protein that exhibits isomerase activity (inferred); peptidyl-prolyl cis-trans isomerase activity (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Fanconi anemia (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FK506 binding protein 3, 25kDa; FK506-binding protein; peptidyl-prolyl cis-trans isomerase FKBP3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,317,559 - 175,332,987 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,317,558 - 175,332,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21195,185,882 - 195,196,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
FKBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,317,559 - 175,332,987 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,317,558 - 175,332,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21195,185,882 - 195,196,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FKBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381445,115,599 - 45,134,481 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1445,115,599 - 45,135,319 (-)EnsemblGRCh38hg38GRCh38
GRCh371445,584,802 - 45,603,684 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361444,654,859 - 44,674,272 (-)NCBINCBI36Build 36hg18NCBI36
Build 341444,654,858 - 44,674,272NCBI
Celera1425,446,055 - 25,464,985 (-)NCBICelera
Cytogenetic Map14q21.2NCBI
HuRef1425,695,534 - 25,714,603 (-)NCBIHuRef
CHM1_11445,522,949 - 45,541,880 (-)NCBICHM1_1
T2T-CHM13v2.01439,307,610 - 39,327,326 (-)NCBIT2T-CHM13v2.0
Fkbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391265,109,206 - 65,120,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1265,109,198 - 65,120,781 (-)EnsemblGRCm39 Ensembl
GRCm381265,062,432 - 65,073,938 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1265,062,424 - 65,074,007 (-)EnsemblGRCm38mm10GRCm38
MGSCv371266,163,419 - 66,174,925 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361265,981,037 - 65,992,545 (-)NCBIMGSCv36mm8
Celera1266,192,119 - 66,203,625 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1227.21NCBI
Fkbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8688,850,137 - 88,862,542 (-)NCBIGRCr8
mRatBN7.2683,113,885 - 83,125,500 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl683,113,786 - 83,127,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx683,473,444 - 83,485,087 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0683,772,806 - 83,784,449 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0683,214,542 - 83,226,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0686,810,865 - 86,822,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl686,810,809 - 86,822,094 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0696,299,844 - 96,311,094 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4686,410,859 - 86,422,588 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1686,414,508 - 86,426,029 (-)NCBI
Celera681,681,832 - 81,693,444 (-)NCBICelera
Cytogenetic Map6q24NCBI
Fkbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540916,810,710 - 16,824,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540916,810,934 - 16,824,380 (+)NCBIChiLan1.0ChiLan1.0
FKBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21546,288,413 - 46,308,400 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11445,504,923 - 45,525,007 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01425,732,308 - 25,750,885 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11444,060,161 - 44,078,742 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1444,060,160 - 44,078,742 (-)Ensemblpanpan1.1panPan2
FKBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1822,550,241 - 22,560,501 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl822,550,413 - 22,560,465 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha822,368,232 - 22,378,496 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0822,709,461 - 22,719,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl822,709,633 - 22,719,684 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1822,371,854 - 22,382,115 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0822,438,224 - 22,448,461 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0822,774,229 - 22,784,493 (-)NCBIUU_Cfam_GSD_1.0
Fkbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864054,526,850 - 54,542,150 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365834,146,615 - 4,164,568 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365834,146,745 - 4,162,062 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12422,236,032 - 22,254,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666116287,670 - 307,305 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fkbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473123,395,680 - 23,409,336 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FKBP3
218 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 4 3 5 2 23 2 3 3
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000026628   ⟹   ENSSSCP00000026583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1175,317,559 - 175,332,987 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060031   ⟹   ENSSSCP00000050320
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1175,317,561 - 175,332,454 (-)Ensembl
RefSeq Acc Id: NM_001244157   ⟹   NP_001231086
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11175,317,558 - 175,332,705 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001231086   ⟸   NM_001244157
- UniProtKB: A0A4X1SKS4 (UniProtKB/TrEMBL),   A0A8D1UXN8 (UniProtKB/TrEMBL),   I3LR51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000050320   ⟸   ENSSSCT00000060031
RefSeq Acc Id: ENSSSCP00000026583   ⟸   ENSSSCT00000026628
Protein Domains
PPIase FKBP-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021217 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005000445 UniProtKB/TrEMBL
  ENSSSCG00015071952 UniProtKB/TrEMBL
  ENSSSCG00025021571 UniProtKB/TrEMBL
  ENSSSCG00030071555 UniProtKB/TrEMBL
  ENSSSCG00035049318 UniProtKB/TrEMBL
  ENSSSCG00040069106 UniProtKB/TrEMBL
  ENSSSCG00045020174 UniProtKB/TrEMBL
  ENSSSCG00050056048 UniProtKB/TrEMBL
  ENSSSCG00055016049 UniProtKB/TrEMBL
  ENSSSCG00060027396 UniProtKB/TrEMBL
  ENSSSCG00065073664 UniProtKB/TrEMBL
  ENSSSCG00070001934 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026628 ENTREZGENE
  ENSSSCT00000026628.4 UniProtKB/TrEMBL
  ENSSSCT00000060031.3 UniProtKB/TrEMBL
  ENSSSCT00005000599.1 UniProtKB/TrEMBL
  ENSSSCT00015096664.1 UniProtKB/TrEMBL
  ENSSSCT00015096946.1 UniProtKB/TrEMBL
  ENSSSCT00025029326.1 UniProtKB/TrEMBL
  ENSSSCT00025029374.1 UniProtKB/TrEMBL
  ENSSSCT00030100178.1 UniProtKB/TrEMBL
  ENSSSCT00030100236.1 UniProtKB/TrEMBL
  ENSSSCT00035065744.1 UniProtKB/TrEMBL
  ENSSSCT00035065750.1 UniProtKB/TrEMBL
  ENSSSCT00040094612.1 UniProtKB/TrEMBL
  ENSSSCT00040094743.1 UniProtKB/TrEMBL
  ENSSSCT00045034410.1 UniProtKB/TrEMBL
  ENSSSCT00045034471.1 UniProtKB/TrEMBL
  ENSSSCT00050076452.1 UniProtKB/TrEMBL
  ENSSSCT00050076473.1 UniProtKB/TrEMBL
  ENSSSCT00055031867.1 UniProtKB/TrEMBL
  ENSSSCT00055031943.1 UniProtKB/TrEMBL
  ENSSSCT00060037083.1 UniProtKB/TrEMBL
  ENSSSCT00060037094.1 UniProtKB/TrEMBL
  ENSSSCT00065101429.1 UniProtKB/TrEMBL
  ENSSSCT00065101470.1 UniProtKB/TrEMBL
  ENSSSCT00070003617.1 UniProtKB/TrEMBL
  ENSSSCT00070003623.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.80 UniProtKB/TrEMBL
  3.10.50.40 UniProtKB/TrEMBL
InterPro FKBP3 UniProtKB/TrEMBL
  FKBP3_BTHB UniProtKB/TrEMBL
  PPIase_dom_sf UniProtKB/TrEMBL
  PPIase_FKBP_dom UniProtKB/TrEMBL
KEGG Report ssc:100152728 UniProtKB/TrEMBL
NCBI Gene FKBP3 ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3 UniProtKB/TrEMBL
  PTHR46493 UniProtKB/TrEMBL
Pfam BTHB UniProtKB/TrEMBL
  FKBP_C UniProtKB/TrEMBL
PROSITE FKBP_PPIASE UniProtKB/TrEMBL
Superfamily-SCOP FKBP-like UniProtKB/TrEMBL
UniProt A0A4X1SKN7_PIG UniProtKB/TrEMBL
  A0A4X1SKS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UBY1_PIG UniProtKB/TrEMBL
  A0A8D1UXN8 ENTREZGENE, UniProtKB/TrEMBL
  I3LR51 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287B1N7 UniProtKB/TrEMBL
VGNC ID VGNC:88146 ENTREZGENE