NOL6 (nucleolar protein 6) - Rat Genome Database

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Gene: NOL6 (nucleolar protein 6) Sus scrofa
Analyze
Symbol: NOL6
Name: nucleolar protein 6
RGD ID: 14105138
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN ribosomal small subunit biogenesis (inferred); rRNA processing (inferred); tRNA export from nucleus (inferred); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN condensed nuclear chromosome (inferred); CURI complex (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleolar protein family 6 (RNA-associated)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,022,035 - 33,035,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,022,035 - 33,035,201 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,284,318 - 37,297,446 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
NOL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,022,035 - 33,035,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,022,035 - 33,035,201 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,284,318 - 37,297,446 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,461,353 - 33,473,924 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,461,353 - 33,473,930 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,461,351 - 33,473,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,451,351 - 33,463,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 34933,451,351 - 33,463,941NCBI
Celera933,391,458 - 33,404,047 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef933,417,486 - 33,430,062 (-)NCBIHuRef
CHM1_1933,461,135 - 33,473,725 (-)NCBICHM1_1
T2T-CHM13v2.0933,479,851 - 33,492,421 (-)NCBIT2T-CHM13v2.0
Nol6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,114,427 - 41,124,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,114,427 - 41,124,455 (-)EnsemblGRCm39 Ensembl
GRCm38441,114,427 - 41,124,339 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,114,427 - 41,124,455 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,061,460 - 41,071,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,303,098 - 41,312,959 (-)NCBIMGSCv36mm8
Celera440,775,363 - 40,785,297 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.98NCBI
Nol6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,055,863 - 61,083,249 (-)NCBIGRCr8
mRatBN7.2556,259,919 - 56,270,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,260,830 - 56,270,336 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,444,448 - 57,473,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,445,344 - 57,455,018 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,975,270 - 61,985,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,523,391 - 58,533,113 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1558,524,509 - 58,533,044 (-)NCBI
Celera554,857,309 - 54,885,360 (-)NCBICelera
Cytogenetic Map5q22NCBI
Nol6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,211,079 - 2,224,259 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,210,490 - 2,225,275 (+)NCBIChiLan1.0ChiLan1.0
NOL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,090,325 - 91,139,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1991,096,280 - 91,145,542 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0933,242,163 - 33,291,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1934,053,100 - 34,100,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl934,053,100 - 34,100,854 (-)Ensemblpanpan1.1panPan2
NOL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,533,150 - 50,544,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,533,453 - 50,545,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,163,070 - 49,174,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,473,823 - 51,485,663 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,472,882 - 51,485,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,137,783 - 50,149,610 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,004,897 - 50,016,740 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,770,150 - 50,782,005 (-)NCBIUU_Cfam_GSD_1.0
Nol6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,434,252 - 165,449,982 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365241,982,898 - 1,997,054 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365241,981,832 - 1,997,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,791,704 - 46,804,091 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,791,725 - 46,805,338 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,680,804 - 43,693,327 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,212,437 - 38,227,288 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,211,389 - 38,236,793 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOL6
202 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 3 3 4 2 22 2 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012031   ⟹   ENSSSCP00000011723
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1033,022,035 - 33,035,200 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068633   ⟹   ENSSSCP00000069325
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1033,022,035 - 33,033,953 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081942   ⟹   ENSSSCP00000067275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1033,022,040 - 33,035,201 (+)Ensembl
RefSeq Acc Id: XM_003130678   ⟹   XP_003130726
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11033,022,035 - 33,035,201 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003130726   ⟸   XM_003130678
- UniProtKB: F1SE91 (UniProtKB/TrEMBL),   A0A4X1UR70 (UniProtKB/TrEMBL),   A0A8D1X043 (UniProtKB/TrEMBL),   A0A8D0SPK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069325   ⟸   ENSSSCT00000068633
RefSeq Acc Id: ENSSSCP00000011723   ⟸   ENSSSCT00000012031
RefSeq Acc Id: ENSSSCP00000067275   ⟸   ENSSSCT00000081942
Protein Domains
Nrap protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010990 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030645 UniProtKB/TrEMBL
  ENSSSCG00015045435 UniProtKB/TrEMBL
  ENSSSCG00025058746 UniProtKB/TrEMBL
  ENSSSCG00030049982 UniProtKB/TrEMBL
  ENSSSCG00035000178 UniProtKB/TrEMBL
  ENSSSCG00040029407 UniProtKB/TrEMBL
  ENSSSCG00045001606 UniProtKB/TrEMBL
  ENSSSCG00050059130 UniProtKB/TrEMBL
  ENSSSCG00055015176 UniProtKB/TrEMBL
  ENSSSCG00060077027 UniProtKB/TrEMBL
  ENSSSCG00065035311 UniProtKB/TrEMBL
  ENSSSCG00070018911 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012031 ENTREZGENE
  ENSSSCT00000012031.5 UniProtKB/TrEMBL
  ENSSSCT00000068633.1 UniProtKB/TrEMBL
  ENSSSCT00005049940.1 UniProtKB/TrEMBL
  ENSSSCT00005049978.1 UniProtKB/TrEMBL
  ENSSSCT00005050022.1 UniProtKB/TrEMBL
  ENSSSCT00015060746.1 UniProtKB/TrEMBL
  ENSSSCT00015060843.1 UniProtKB/TrEMBL
  ENSSSCT00015060919.1 UniProtKB/TrEMBL
  ENSSSCT00025080473.1 UniProtKB/TrEMBL
  ENSSSCT00025080956.1 UniProtKB/TrEMBL
  ENSSSCT00025081258.1 UniProtKB/TrEMBL
  ENSSSCT00030069687.1 UniProtKB/TrEMBL
  ENSSSCT00030069706.1 UniProtKB/TrEMBL
  ENSSSCT00030069729.1 UniProtKB/TrEMBL
  ENSSSCT00035000190.1 UniProtKB/TrEMBL
  ENSSSCT00035000193.1 UniProtKB/TrEMBL
  ENSSSCT00035000197.1 UniProtKB/TrEMBL
  ENSSSCT00040039564.1 UniProtKB/TrEMBL
  ENSSSCT00040039624.1 UniProtKB/TrEMBL
  ENSSSCT00040039694.1 UniProtKB/TrEMBL
  ENSSSCT00045002583.1 UniProtKB/TrEMBL
  ENSSSCT00045002606.1 UniProtKB/TrEMBL
  ENSSSCT00045002627.1 UniProtKB/TrEMBL
  ENSSSCT00050080568.1 UniProtKB/TrEMBL
  ENSSSCT00050080577.1 UniProtKB/TrEMBL
  ENSSSCT00050080594.1 UniProtKB/TrEMBL
  ENSSSCT00055030017.1 UniProtKB/TrEMBL
  ENSSSCT00055030112.1 UniProtKB/TrEMBL
  ENSSSCT00055030201.1 UniProtKB/TrEMBL
  ENSSSCT00060105908.1 UniProtKB/TrEMBL
  ENSSSCT00060105924.1 UniProtKB/TrEMBL
  ENSSSCT00060105957.1 UniProtKB/TrEMBL
  ENSSSCT00065048087.1 UniProtKB/TrEMBL
  ENSSSCT00065048098.1 UniProtKB/TrEMBL
  ENSSSCT00065048109.1 UniProtKB/TrEMBL
  ENSSSCT00070037347.1 UniProtKB/TrEMBL
  ENSSSCT00070037352.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.70.3030 UniProtKB/TrEMBL
InterPro Nrap UniProtKB/TrEMBL
  Nrap_D1 UniProtKB/TrEMBL
  Nrap_D2 UniProtKB/TrEMBL
  Nrap_D3 UniProtKB/TrEMBL
  Nrap_D4 UniProtKB/TrEMBL
  Nrap_D5 UniProtKB/TrEMBL
  Nrap_D6 UniProtKB/TrEMBL
KEGG Report ssc:100511276 UniProtKB/TrEMBL
NCBI Gene NOL6 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 6 UniProtKB/TrEMBL
  PTHR17972 UniProtKB/TrEMBL
Pfam Nrap UniProtKB/TrEMBL
  Nrap_D2 UniProtKB/TrEMBL
  Nrap_D3 UniProtKB/TrEMBL
  Nrap_D4 UniProtKB/TrEMBL
  Nrap_D5 UniProtKB/TrEMBL
  Nrap_D6 UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
UniProt A0A4X1UR70 ENTREZGENE
  A0A4X1UR75_PIG UniProtKB/TrEMBL
  A0A8D0SPK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SSP4_PIG UniProtKB/TrEMBL
  A0A8D1QNW1_PIG UniProtKB/TrEMBL
  A0A8D1QWF4_PIG UniProtKB/TrEMBL
  A0A8D1U3G0_PIG UniProtKB/TrEMBL
  A0A8D1X043 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YFT0_PIG UniProtKB/TrEMBL
  A0A8D2BV41_PIG UniProtKB/TrEMBL
  F1SE91 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UR70 UniProtKB/TrEMBL
  A0A5G2R575 UniProtKB/TrEMBL
VGNC ID VGNC:95926 ENTREZGENE