LAMB2 (laminin subunit beta 2) - Rat Genome Database
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Gene: LAMB2 (laminin subunit beta 2) Sus scrofa
Analyze
Symbol: LAMB2
Name: laminin subunit beta 2
RGD ID: 14104465
Description: INVOLVED IN cell morphogenesis involved in differentiation (ortholog); neuron projection development (ortholog); synapse organization (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); cognitive disorder (ortholog); Diabetic Nephropathies (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: laminin beta 2; laminin subunit beta-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,738,284 - 31,771,220 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,738,282 - 31,750,623 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,969,986 - 34,981,114 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
LAMB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,738,284 - 31,771,220 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,738,282 - 31,750,623 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,969,986 - 34,981,114 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,121,114 - 49,133,118 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,121,114 - 49,133,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,158,547 - 49,170,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,133,551 - 49,145,603 (-)NCBINCBI36hg18NCBI36
Build 34349,133,551 - 49,145,603NCBI
Celera349,115,499 - 49,127,552 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,217,083 - 49,229,135 (-)NCBIHuRef
CHM1_1349,111,294 - 49,123,346 (-)NCBICHM1_1
Lamb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,357,046 - 108,367,729 (+)NCBIGRCm39mm39
GRCm389108,479,847 - 108,490,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,479,736 - 108,490,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,382,193 - 108,392,861 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,338,049 - 108,348,632 (+)NCBImm8
Celera9108,089,281 - 108,099,994 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.4NCBI
Lamb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,268,335 - 117,280,517 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,268,337 - 117,280,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,613,044 - 116,625,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,474,916 - 108,487,056 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
Lamb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,115,087 - 1,127,455 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,115,412 - 1,127,264 (-)NCBIChiLan1.0ChiLan1.0
LAMB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,125,348 - 50,137,258 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,125,460 - 50,137,074 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,045,419 - 49,057,340 (-)NCBIMhudiblu_PPA_v0panPan3
LAMB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2040,050,157 - 40,062,523 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12040,036,967 - 40,062,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Lamb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529826,178 - 841,304 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,523,763 - 10,535,733 (-)NCBI
ChlSab1.1 Ensembl2210,523,717 - 10,536,207 (-)Ensembl
Lamb2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,145,643 - 3,158,781 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3 3 3 2 3 3
Low 7 1 2 20 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012455   ⟹   ENSSSCP00000012130
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,738,287 - 31,771,220 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000043222   ⟹   ENSSSCP00000045227
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,738,284 - 31,751,074 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044966   ⟹   ENSSSCP00000044053
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,738,284 - 31,751,074 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052197   ⟹   ENSSSCP00000048374
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,738,284 - 31,751,074 (-)Ensembl
RefSeq Acc Id: XM_021070660   ⟹   XP_020926319
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,738,282 - 31,750,623 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020926319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL09469 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020926319   ⟸   XM_021070660
- Sequence:
RefSeq Acc Id: ENSSSCP00000044053   ⟸   ENSSSCT00000044966
RefSeq Acc Id: ENSSSCP00000048374   ⟸   ENSSSCT00000052197
RefSeq Acc Id: ENSSSCP00000012130   ⟸   ENSSSCT00000012455
RefSeq Acc Id: ENSSSCP00000045227   ⟸   ENSSSCT00000043222

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011377 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070004241 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012130 UniProtKB/TrEMBL
  ENSSSCP00000044053 UniProtKB/TrEMBL
  ENSSSCP00000045227 UniProtKB/TrEMBL
  ENSSSCP00000048374 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070006808 UniProtKB/TrEMBL
  ENSSSCP00070006834 UniProtKB/TrEMBL
  ENSSSCP00070006841 UniProtKB/TrEMBL
  ENSSSCP00070006853 UniProtKB/TrEMBL
  ENSSSCP00070006865 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012455 UniProtKB/TrEMBL
  ENSSSCT00000043222 UniProtKB/TrEMBL
  ENSSSCT00000044966 UniProtKB/TrEMBL
  ENSSSCT00000052197 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070008279 UniProtKB/TrEMBL
  ENSSSCT00070008310 UniProtKB/TrEMBL
  ENSSSCT00070008318 UniProtKB/TrEMBL
  ENSSSCT00070008333 UniProtKB/TrEMBL
  ENSSSCT00070008345 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1490 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV_B UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/TrEMBL
NCBI Gene LAMB2 ENTREZGENE
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_IVB UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
UniGene Ssc.53942 ENTREZGENE
UniProt A0A287AJ64_PIG UniProtKB/TrEMBL
  A0A287AMT2_PIG UniProtKB/TrEMBL
  A0A287AWV5_PIG UniProtKB/TrEMBL
  A0A4X1SUV2_PIG UniProtKB/TrEMBL
  A0A4X1SUZ9_PIG UniProtKB/TrEMBL
  A0A4X1SVB6_PIG UniProtKB/TrEMBL
  A0A4X1SVD5_PIG UniProtKB/TrEMBL
  A0A4X1SWK7_PIG UniProtKB/TrEMBL
  F1SPT5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89621 ENTREZGENE