CGREF1 (cell growth regulator with EF-hand domain 1) - Rat Genome Database

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Gene: CGREF1 (cell growth regulator with EF-hand domain 1) Sus scrofa
Analyze
Symbol: CGREF1
Name: cell growth regulator with EF-hand domain 1
RGD ID: 14104269
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH essential fructosuria (ortholog); genetic disease (ortholog); Liver Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell growth regulator with EF hand domain protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13112,006,596 - 112,020,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,000,618 - 119,018,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
CGREF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13112,006,596 - 112,020,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,000,618 - 119,018,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CGREF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,099,353 - 27,119,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,098,889 - 27,119,128 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,322,221 - 27,341,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,176,973 - 27,195,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,235,119 - 27,253,622NCBI
Celera227,168,567 - 27,188,302 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,064,526 - 27,084,159 (-)NCBIHuRef
CHM1_1227,252,137 - 27,271,942 (-)NCBICHM1_1
T2T-CHM13v2.0227,141,029 - 27,160,791 (-)NCBIT2T-CHM13v2.0
Cgref1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,090,487 - 31,102,771 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,090,487 - 31,102,935 (-)EnsemblGRCm39 Ensembl
GRCm38530,933,143 - 30,945,480 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,933,143 - 30,945,591 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,235,516 - 31,247,853 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,209,724 - 31,222,166 (-)NCBIMGSCv36mm8
Celera528,412,941 - 28,425,273 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.9NCBI
Cgref1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,151,795 - 31,163,801 (+)NCBIGRCr8
mRatBN7.2625,431,846 - 25,443,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,431,799 - 25,443,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,732,163 - 25,744,167 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,048,027 - 26,060,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,527,201 - 25,539,214 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,797,126 - 26,809,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,797,126 - 26,809,129 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,612,741 - 36,624,747 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,414,812 - 25,426,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,417,842 - 25,429,770 (+)NCBI
Celera624,922,567 - 24,934,501 (+)NCBICelera
RH 3.4 Map6119.2RGD
Cytogenetic Map6q14NCBI
Cgref1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,072,563 - 9,086,615 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,072,333 - 9,086,427 (-)NCBIChiLan1.0ChiLan1.0
CGREF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,396,407 - 99,415,823 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,400,376 - 99,419,791 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,098,387 - 27,118,129 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,189,151 - 27,207,263 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,188,352 - 27,199,407 (-)Ensemblpanpan1.1panPan2
CGREF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,093,664 - 21,106,797 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,985,489 - 20,998,849 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,414,345 - 21,427,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,413,017 - 21,427,705 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,101,095 - 21,114,500 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,112,197 - 21,125,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,159,031 - 21,161,865 (-)NCBIUU_Cfam_GSD_1.0
Cgref1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,395,880 - 65,410,272 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,429,131 - 5,442,965 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,429,397 - 5,444,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CGREF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,500,056 - 80,516,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,513,701 - 80,516,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,622,380 - 31,639,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cgref1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,203,367 - 9,216,309 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,203,367 - 9,216,485 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CGREF1
577 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 3 3 5 2 23 2 3 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: XM_003125298   ⟹   XP_003125346
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13112,006,596 - 112,020,211 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003125346   ⟸   XM_003125298
- UniProtKB: A0A8D1TWX0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008555 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030008447 UniProtKB/TrEMBL
  ENSSSCG00035073748 UniProtKB/TrEMBL
  ENSSSCG00040073352 UniProtKB/TrEMBL
  ENSSSCG00045004324 UniProtKB/TrEMBL
  ENSSSCG00055006533 UniProtKB/TrEMBL
  ENSSSCG00070011447 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009360 ENTREZGENE
  ENSSSCT00000009360.3 UniProtKB/TrEMBL
  ENSSSCT00030011494.1 UniProtKB/TrEMBL
  ENSSSCT00030011501.1 UniProtKB/TrEMBL
  ENSSSCT00035099982.1 UniProtKB/TrEMBL
  ENSSSCT00035099991.1 UniProtKB/TrEMBL
  ENSSSCT00035099999.1 UniProtKB/TrEMBL
  ENSSSCT00040101182.1 UniProtKB/TrEMBL
  ENSSSCT00045007217.1 UniProtKB/TrEMBL
  ENSSSCT00045007220.1 UniProtKB/TrEMBL
  ENSSSCT00045007221.1 UniProtKB/TrEMBL
  ENSSSCT00055012630.1 UniProtKB/TrEMBL
  ENSSSCT00055012660.1 UniProtKB/TrEMBL
  ENSSSCT00055012685.1 UniProtKB/TrEMBL
  ENSSSCT00070022301.1 UniProtKB/TrEMBL
  ENSSSCT00070022307.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report ssc:100522927 UniProtKB/TrEMBL
NCBI Gene CGREF1 ENTREZGENE
PANTHER CELL GROWTH REGULATOR WITH EF HAND DOMAIN PROTEIN 1 UniProtKB/TrEMBL
  MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A4X1TQF3_PIG UniProtKB/TrEMBL
  A0A8D1B8B3_PIG UniProtKB/TrEMBL
  A0A8D1BDR3_PIG UniProtKB/TrEMBL
  A0A8D1KM31_PIG UniProtKB/TrEMBL
  A0A8D1PV31_PIG UniProtKB/TrEMBL
  A0A8D1TWX0 ENTREZGENE, UniProtKB/TrEMBL
  F1SEC5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98866 ENTREZGENE