TMPPE (transmembrane protein with metallophosphoesterase domain) - Rat Genome Database

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Gene: TMPPE (transmembrane protein with metallophosphoesterase domain) Sus scrofa
Analyze
Symbol: TMPPE
Name: transmembrane protein with metallophosphoesterase domain
RGD ID: 14103154
Description: ENCODES a protein that exhibits hydrolase activity (inferred); UDP-2,3-diacylglucosamine hydrolase activity (inferred); INVOLVED IN lipid A biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); GM1 gangliosidosis (ortholog); GM1 gangliosidosis type 1 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,969,682 - 18,978,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,972,108 - 18,978,908 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TMPPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,969,682 - 18,978,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,972,108 - 18,978,908 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMPPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38333,090,422 - 33,097,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl333,090,421 - 33,097,146 (-)EnsemblGRCh38hg38GRCh38
GRCh37333,131,914 - 33,138,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,106,921 - 33,113,297 (-)NCBINCBI36Build 36hg18NCBI36
Celera333,074,968 - 33,081,352 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef333,071,883 - 33,078,266 (-)NCBIHuRef
CHM1_1333,081,960 - 33,088,343 (-)NCBICHM1_1
T2T-CHM13v2.0333,092,195 - 33,098,917 (-)NCBIT2T-CHM13v2.0
Tmppe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,230,163 - 114,240,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,230,173 - 114,236,344 (+)EnsemblGRCm39 Ensembl
GRCm389114,401,095 - 114,411,201 (+)ENTREZGENEGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,401,105 - 114,407,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379114,310,631 - 114,317,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera9114,873,252 - 114,879,770 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.4NCBI
Tmppe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,963,707 - 122,971,594 (+)NCBIGRCr8
mRatBN7.28114,085,497 - 114,093,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,084,831 - 114,094,286 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,702,263 - 119,710,123 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,901,523 - 117,909,389 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,744,304 - 115,752,178 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,439,679 - 122,447,208 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08121,752,343 - 121,760,062 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8113,332,400 - 113,337,689 (+)NCBICelera
Cytogenetic Map8q32NCBI
Tmppe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421342,631 - 346,581 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421342,631 - 346,581 (-)NCBIChiLan1.0ChiLan1.0
TMPPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2233,068,880 - 33,082,701 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1333,073,644 - 33,087,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0333,024,623 - 33,031,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,327,829 - 33,336,778 (-)NCBIpanpan1.1PanPan1.1panPan2
TMPPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,733,979 - 3,735,884 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,776,653 - 3,780,248 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0233,992,464 - 3,996,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,992,236 - 3,999,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,827,166 - 3,830,797 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,954,481 - 3,958,103 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,928,574 - 3,931,725 (+)NCBIUU_Cfam_GSD_1.0
Tmppe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,295,828 - 190,301,342 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647323,435,933 - 23,440,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMPPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,586,831 - 77,591,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604150,964,023 - 50,971,321 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmppe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478811,106,387 - 11,110,482 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478811,102,842 - 11,110,776 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMPPE
80 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 20 2 3 3
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021071556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000051307   ⟹   ENSSSCP00000047152
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,969,647 - 18,978,131 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067072   ⟹   ENSSSCP00000069096
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,969,684 - 18,978,296 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075727   ⟹   ENSSSCP00000071091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,969,682 - 18,978,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085348   ⟹   ENSSSCP00000072267
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,969,690 - 18,978,997 (-)Ensembl
RefSeq Acc Id: XM_021071556   ⟹   XP_020927215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11318,972,108 - 18,978,908 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020927215   ⟸   XM_021071556
- UniProtKB: A0A4X1UDE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047152   ⟸   ENSSSCT00000051307
RefSeq Acc Id: ENSSSCP00000071091   ⟸   ENSSSCT00000075727
RefSeq Acc Id: ENSSSCP00000072267   ⟸   ENSSSCT00000085348
RefSeq Acc Id: ENSSSCP00000069096   ⟸   ENSSSCT00000067072

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00040007310 UniProtKB/TrEMBL
  ENSSSCG00045005854 UniProtKB/TrEMBL
  ENSSSCG00050042831 UniProtKB/TrEMBL
  ENSSSCG00055021291 UniProtKB/TrEMBL
  ENSSSCG00070015939 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000067072.2 UniProtKB/TrEMBL
  ENSSSCT00000075727.2 UniProtKB/TrEMBL
  ENSSSCT00000085348 ENTREZGENE
  ENSSSCT00000085348.2 UniProtKB/TrEMBL
  ENSSSCT00040009594.1 UniProtKB/TrEMBL
  ENSSSCT00040009601.1 UniProtKB/TrEMBL
  ENSSSCT00045009727.1 UniProtKB/TrEMBL
  ENSSSCT00045009734.1 UniProtKB/TrEMBL
  ENSSSCT00050058216.1 UniProtKB/TrEMBL
  ENSSSCT00050058217.1 UniProtKB/TrEMBL
  ENSSSCT00055041801.1 UniProtKB/TrEMBL
  ENSSSCT00055041835.1 UniProtKB/TrEMBL
  ENSSSCT00055041859.1 UniProtKB/TrEMBL
  ENSSSCT00055041888.1 UniProtKB/TrEMBL
  ENSSSCT00070031304.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/TrEMBL
InterPro Calcineurin-like_PHP_ApaH UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/TrEMBL
NCBI Gene TMPPE ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED UniProtKB/TrEMBL
Pfam Metallophos UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/TrEMBL
UniProt A0A287ATG0_PIG UniProtKB/TrEMBL
  A0A4X1UDE9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94230 ENTREZGENE