BAP1 (BRCA1 associated protein 1) - Rat Genome Database

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Gene: BAP1 (BRCA1 associated protein 1) Sus scrofa
Analyze
Symbol: BAP1
Name: BRCA1 associated protein 1
RGD ID: 14102808
Description: ENCODES a protein that exhibits chromatin binding (inferred); thiol-dependent deubiquitinase (inferred); INVOLVED IN macrophage homeostasis (ortholog); monoubiquitinated protein deubiquitination (ortholog); positive regulation of protein targeting to mitochondrion (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); adrenocortical carcinoma (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin carboxyl-terminal hydrolase BAP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,544,575 - 34,553,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,544,570 - 34,553,538 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,758,317 - 37,767,182 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
BAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,544,575 - 34,553,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,544,570 - 34,553,538 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,758,317 - 37,767,182 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl352,401,008 - 52,410,008 (-)EnsemblGRCh38hg38GRCh38
GRCh38352,401,004 - 52,410,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37352,435,024 - 52,444,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,410,064 - 52,419,049 (-)NCBINCBI36hg18NCBI36
Build 34352,410,066 - 52,419,049NCBI
Celera352,414,346 - 52,423,331 (-)NCBI
Cytogenetic Map3p21.1NCBI
HuRef352,497,655 - 52,506,755 (-)NCBIHuRef
CHM1_1352,387,546 - 52,396,647 (-)NCBICHM1_1
Bap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,973,358 - 30,981,887 (+)NCBIGRCm39mm39
GRCm39 Ensembl1430,973,407 - 30,981,901 (+)Ensembl
GRCm381431,251,352 - 31,259,930 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,251,450 - 31,259,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv371432,064,675 - 32,073,115 (+)NCBIGRCm37mm9NCBIm37
MGSCv361430,080,596 - 30,088,939 (+)NCBImm8
Celera1427,510,099 - 27,518,539 (+)NCBICelera
Cytogenetic Map14BNCBI
Bap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,446,709 - 6,455,535 (+)NCBI
Rnor_6.0 Ensembl167,336,685 - 7,345,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0167,336,685 - 7,345,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0167,265,075 - 7,273,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,684,470 - 6,693,296 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1166,684,871 - 6,691,564 (+)NCBI
Celera168,733,498 - 8,742,324 (-)NCBICelera
Cytogenetic Map16p16NCBI
Bap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,390,524 - 2,400,645 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,391,970 - 2,400,645 (-)NCBIChiLan1.0ChiLan1.0
BAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,573,785 - 53,581,943 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,573,785 - 53,581,943 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0352,344,067 - 52,352,187 (-)NCBIMhudiblu_PPA_v0panPan3
BAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,355,499 - 37,364,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,355,494 - 37,511,125 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,337,055 - 37,345,854 (+)NCBI
ROS_Cfam_1.02037,705,626 - 37,714,425 (+)NCBI
UMICH_Zoey_3.12037,069,579 - 37,078,375 (+)NCBI
UNSW_CanFamBas_1.02037,478,238 - 37,487,043 (+)NCBI
UU_Cfam_GSD_1.02037,762,923 - 37,771,723 (+)NCBI
Bap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,100,437 - 170,109,229 (-)NCBI
SpeTri2.0NW_0049364733,239,009 - 3,247,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,765,510 - 13,774,866 (-)NCBI
ChlSab1.1 Ensembl2213,764,686 - 13,774,740 (-)Ensembl
Vero_WHO_p1.0NW_023666041153,126,822 - 153,136,184 (+)NCBI
Bap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248224,809,489 - 4,818,514 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 3 3 4 2 22 2 2 2
Low 5 1 1 1 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012518   ⟹   ENSSSCP00000012190
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1334,544,575 - 34,553,502 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037523   ⟹   ENSSSCP00000033924
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1334,544,578 - 34,553,621 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065124   ⟹   ENSSSCP00000039898
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1334,544,578 - 34,553,621 (-)Ensembl
RefSeq Acc Id: XM_001925236   ⟹   XP_001925271
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,544,570 - 34,553,509 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005669632   ⟹   XP_005669689
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,544,570 - 34,553,538 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001925271 (Get FASTA)   NCBI Sequence Viewer  
  XP_005669689 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAA53730 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005669689   ⟸   XM_005669632
- Peptide Label: isoform X2
- UniProtKB: A0A287BJJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001925271   ⟸   XM_001925236
- Peptide Label: isoform X1
- UniProtKB: A0A286ZQN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039898   ⟸   ENSSSCT00000065124
RefSeq Acc Id: ENSSSCP00000033924   ⟸   ENSSSCT00000037523
RefSeq Acc Id: ENSSSCP00000012190   ⟸   ENSSSCT00000012518
Protein Domains
UCH_1   UCH_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011438 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070025589 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012190 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000033924 UniProtKB/TrEMBL
  ENSSSCP00000039898 UniProtKB/TrEMBL
  ENSSSCP00070043288 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012518 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037523 UniProtKB/TrEMBL
  ENSSSCT00000065124 UniProtKB/TrEMBL
  ENSSSCT00070051175 UniProtKB/TrEMBL
Gene3D-CATH 3.40.532.10 UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C12_UCH UniProtKB/TrEMBL
  Peptidase_C12_UCH_sf UniProtKB/TrEMBL
  UCH_C UniProtKB/TrEMBL
KEGG Report ssc:100154798 UniProtKB/TrEMBL
NCBI Gene BAP1 ENTREZGENE
PANTHER PTHR10589 UniProtKB/TrEMBL
Pfam Peptidase_C12 UniProtKB/TrEMBL
  UCH_C UniProtKB/TrEMBL
PRINTS UBCTHYDRLASE UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A286ZQN6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A7E1_PIG UniProtKB/TrEMBL
  A0A287BJJ4 ENTREZGENE
  A0A4X1VP54_PIG UniProtKB/TrEMBL
  F1SIW6_PIG UniProtKB/TrEMBL
  K9IVT5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85754 ENTREZGENE