SLC16A10 (solute carrier family 16 member 10) - Rat Genome Database

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Gene: SLC16A10 (solute carrier family 16 member 10) Sus scrofa
Analyze
Symbol: SLC16A10
Name: solute carrier family 16 member 10
RGD ID: 14100712
Description: ENCODES a protein that exhibits aromatic amino acid transmembrane transporter activity (inferred); glucose transmembrane transporter activity (inferred); L-phenylalanine transmembrane transporter activity (inferred); INVOLVED IN thyroid hormone generation (ortholog); thyroid hormone transport (ortholog); thyroid-stimulating hormone secretion (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN basolateral plasma membrane (inferred); cell junction (inferred); intracellular membrane-bounded organelle (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,998,359 - 77,138,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1176,998,359 - 77,139,534 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,714,334 - 86,743,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC16A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,998,359 - 77,138,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1176,998,359 - 77,139,534 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,714,334 - 86,743,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386111,087,503 - 111,231,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6111,087,503 - 111,231,194 (+)EnsemblGRCh38hg38GRCh38
GRCh376111,408,706 - 111,552,397 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366111,515,502 - 111,650,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 346111,515,501 - 111,650,906NCBI
Celera6112,155,354 - 112,291,161 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6108,979,921 - 109,115,795 (+)NCBIHuRef
CHM1_16111,671,814 - 111,807,532 (+)NCBICHM1_1
T2T-CHM13v2.06112,266,105 - 112,414,313 (+)NCBIT2T-CHM13v2.0
Slc16a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391039,909,528 - 40,018,262 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1039,909,528 - 40,018,254 (-)EnsemblGRCm39 Ensembl
GRCm381040,033,532 - 40,142,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1040,033,532 - 40,142,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv371039,753,341 - 39,862,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361039,765,179 - 39,831,671 (-)NCBIMGSCv36mm8
Celera1040,919,892 - 41,029,158 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1021.48NCBI
Slc16a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,014,229 - 45,122,392 (-)NCBIGRCr8
mRatBN7.22043,454,819 - 43,567,839 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,459,709 - 43,567,839 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2045,208,679 - 45,316,814 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02044,867,884 - 44,976,015 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02045,618,250 - 45,720,525 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02045,138,433 - 45,260,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2045,143,453 - 45,260,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,979,059 - 46,979,589 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02046,863,305 - 46,913,500 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42044,211,651 - 44,325,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12044,234,662 - 44,348,343 (-)NCBI
Celera2044,173,196 - 44,274,083 (-)NCBICelera
Cytogenetic Map20q12NCBI
Slc16a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541135,758,612 - 35,871,164 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541135,758,612 - 35,871,179 (+)NCBIChiLan1.0ChiLan1.0
SLC16A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25131,095,135 - 131,236,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16128,981,027 - 129,131,151 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06108,889,644 - 109,037,479 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16112,968,652 - 113,107,508 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,968,668 - 113,106,721 (+)Ensemblpanpan1.1panPan2
SLC16A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11267,612,563 - 67,720,763 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1267,705,037 - 67,719,985 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1267,428,455 - 67,544,084 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01268,490,106 - 68,600,784 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,489,840 - 68,600,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11267,841,203 - 67,952,145 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01267,687,841 - 67,803,646 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01268,013,238 - 68,124,546 (+)NCBIUU_Cfam_GSD_1.0
Slc16a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946102,548,097 - 102,650,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365646,822,992 - 6,925,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365646,823,054 - 6,925,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11362,645,692 - 62,787,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1362,646,876 - 62,786,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604034,950,268 - 35,087,370 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249162,095,989 - 2,237,996 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249162,096,224 - 2,239,856 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC16A10
2546 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1 2
Low 10 4 3 3 23 1 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000004880   ⟹   ENSSSCP00000004765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl177,116,027 - 77,138,639 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000022616   ⟹   ENSSSCP00000027025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl176,998,387 - 77,136,046 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000028340   ⟹   ENSSSCP00000026616
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl176,998,359 - 77,136,046 (+)Ensembl
RefSeq Acc Id: XM_021091212   ⟹   XP_020946871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1176,998,359 - 77,139,534 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091215   ⟹   XP_020946874
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1176,998,391 - 77,133,843 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020946871   ⟸   XM_021091212
- Peptide Label: isoform X1
- UniProtKB: A0A480E1H1 (UniProtKB/TrEMBL),   I3LR83 (UniProtKB/TrEMBL),   A0A8D0NSE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946874   ⟸   XM_021091215
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VBQ8 (UniProtKB/TrEMBL),   I3LSD2 (UniProtKB/TrEMBL),   A0A8D0NSE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027025   ⟸   ENSSSCT00000022616
RefSeq Acc Id: ENSSSCP00000026616   ⟸   ENSSSCT00000028340
RefSeq Acc Id: ENSSSCP00000004765   ⟸   ENSSSCT00000004880

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015043481 UniProtKB/TrEMBL
  ENSSSCG00025075600 UniProtKB/TrEMBL
  ENSSSCG00030017904 UniProtKB/TrEMBL
  ENSSSCG00035016715 UniProtKB/TrEMBL
  ENSSSCG00040038298 UniProtKB/TrEMBL
  ENSSSCG00045008205 UniProtKB/TrEMBL
  ENSSSCG00050021732 UniProtKB/TrEMBL
  ENSSSCG00055022900 UniProtKB/TrEMBL
  ENSSSCG00060045611 UniProtKB/TrEMBL
  ENSSSCG00065031382 UniProtKB/TrEMBL
  ENSSSCG00070022788 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004880.5 UniProtKB/TrEMBL
  ENSSSCT00000022616 ENTREZGENE
  ENSSSCT00000022616.3 UniProtKB/TrEMBL
  ENSSSCT00000028340 ENTREZGENE
  ENSSSCT00000028340.4 UniProtKB/TrEMBL
  ENSSSCT00015057881.1 UniProtKB/TrEMBL
  ENSSSCT00025104356.1 UniProtKB/TrEMBL
  ENSSSCT00030024717.1 UniProtKB/TrEMBL
  ENSSSCT00030024736.1 UniProtKB/TrEMBL
  ENSSSCT00030024762.1 UniProtKB/TrEMBL
  ENSSSCT00035021405.1 UniProtKB/TrEMBL
  ENSSSCT00035021413.1 UniProtKB/TrEMBL
  ENSSSCT00035021420.1 UniProtKB/TrEMBL
  ENSSSCT00040051524.1 UniProtKB/TrEMBL
  ENSSSCT00040051630.1 UniProtKB/TrEMBL
  ENSSSCT00040051892.1 UniProtKB/TrEMBL
  ENSSSCT00045013786.1 UniProtKB/TrEMBL
  ENSSSCT00050029280.1 UniProtKB/TrEMBL
  ENSSSCT00055045567.1 UniProtKB/TrEMBL
  ENSSSCT00060061891.1 UniProtKB/TrEMBL
  ENSSSCT00060061908.1 UniProtKB/TrEMBL
  ENSSSCT00060061939.1 UniProtKB/TrEMBL
  ENSSSCT00065042447.1 UniProtKB/TrEMBL
  ENSSSCT00065042456.1 UniProtKB/TrEMBL
  ENSSSCT00070045324.1 UniProtKB/TrEMBL
  ENSSSCT00070045330.1 UniProtKB/TrEMBL
  ENSSSCT00070045336.1 UniProtKB/TrEMBL
  ENSSSCT00070045340.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC16A10 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF119 UniProtKB/TrEMBL
  SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 UniProtKB/TrEMBL
  SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A480E1H1 ENTREZGENE
  A0A4X1V9G8_PIG UniProtKB/TrEMBL
  A0A4X1V9H3_PIG UniProtKB/TrEMBL
  A0A4X1VBQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K9G0_PIG UniProtKB/TrEMBL
  A0A8D0NSE3 ENTREZGENE, UniProtKB/TrEMBL
  F1RZP4_PIG UniProtKB/TrEMBL
  I3LR83 ENTREZGENE, UniProtKB/TrEMBL
  I3LSD2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480E1H1 UniProtKB/TrEMBL
VGNC ID VGNC:103178 ENTREZGENE