ATG10 (autophagy related 10) - Rat Genome Database

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Pathways
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Gene: ATG10 (autophagy related 10) Sus scrofa
Analyze
Symbol: ATG10
Name: autophagy related 10
RGD ID: 14099447
Description: ENCODES a protein that exhibits Atg12 conjugating enzyme activity (inferred); Atg12 transferase activity (inferred); transferase activity (inferred); INVOLVED IN positive regulation of protein modification process (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATG10 autophagy related 10 homolog; ubiquitin-like-conjugating enzyme ATG10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl290,437,027 - 90,666,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1290,436,795 - 90,665,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2292,433,581 - 92,661,452 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ATG10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl290,437,027 - 90,666,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1290,436,795 - 90,665,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2292,433,581 - 92,661,452 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38581,972,023 - 82,256,133 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl581,972,023 - 82,276,857 (+)EnsemblGRCh38hg38GRCh38
GRCh37581,267,842 - 81,551,952 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36581,303,630 - 81,586,528 (+)NCBINCBI36Build 36hg18NCBI36
Build 34581,303,629 - 81,586,524NCBI
Celera577,171,858 - 77,456,206 (+)NCBICelera
Cytogenetic Map5q14.1-q14.2NCBI
HuRef576,475,213 - 76,759,595 (+)NCBIHuRef
CHM1_1580,700,529 - 80,984,394 (+)NCBICHM1_1
T2T-CHM13v2.0582,456,197 - 82,741,920 (+)NCBIT2T-CHM13v2.0
Atg10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391391,083,467 - 91,372,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1391,083,475 - 91,372,087 (-)EnsemblGRCm39 Ensembl
GRCm381390,935,348 - 91,224,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1390,935,356 - 91,223,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371391,074,954 - 91,363,592 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361391,410,021 - 91,682,672 (-)NCBIMGSCv36mm8
Celera1394,568,446 - 94,854,283 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1346.46NCBI
Atg10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,843,695 - 24,133,459 (-)NCBIGRCr8
mRatBN7.2222,109,304 - 22,398,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,108,426 - 22,398,233 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,158,574 - 29,449,352 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,258,921 - 27,549,707 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,075,993 - 22,374,108 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,853,546 - 20,152,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,853,546 - 20,152,884 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0219,729,784 - 20,026,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,076,289 - 21,374,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,236,510 - 18,521,138 (-)NCBICelera
Cytogenetic Map2q12NCBI
Atg10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541828,119,912 - 28,363,714 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541828,118,843 - 28,368,358 (-)NCBIChiLan1.0ChiLan1.0
ATG10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2433,050,282 - 33,338,120 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1531,205,637 - 31,516,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0533,029,074 - 33,315,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1533,345,591 - 33,632,229 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl533,348,306 - 33,615,883 (-)Ensemblpanpan1.1panPan2
ATG10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,214,203 - 25,436,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha326,451,651 - 26,672,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0325,127,757 - 25,350,301 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1325,081,956 - 25,303,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0325,049,747 - 25,270,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0325,330,817 - 25,551,944 (-)NCBIUU_Cfam_GSD_1.0
Atg10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213181,119,537 - 181,383,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364691,242,111 - 1,505,743 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364691,241,854 - 1,506,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1476,092,887 - 76,378,175 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl476,092,832 - 76,377,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604924,980,384 - 25,259,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247432,381,038 - 2,649,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247432,381,131 - 2,663,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATG10
4432 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 5 2 23 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024808   ⟹   ENSSSCP00000021613
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl290,452,590 - 90,666,196 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075133   ⟹   ENSSSCP00000071760
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl290,446,532 - 90,666,084 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080336   ⟹   ENSSSCP00000063738
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl290,437,027 - 90,663,593 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106461   ⟹   ENSSSCP00000076959
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl290,437,027 - 90,594,722 (+)Ensembl
RefSeq Acc Id: NM_001190281   ⟹   NP_001177210
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1290,437,027 - 90,594,743 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661528   ⟹   XP_005661585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1290,436,795 - 90,665,383 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661529   ⟹   XP_005661586
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1290,437,162 - 90,665,383 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005661585   ⟸   XM_005661528
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001177210   ⟸   NM_001190281
- UniProtKB: D7RA35 (UniProtKB/TrEMBL),   A0A8D1CX30 (UniProtKB/TrEMBL),   A0A8W4FDM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661586   ⟸   XM_005661529
- Peptide Label: isoform X2
- UniProtKB: I3LC40 (UniProtKB/TrEMBL),   A0A4X1T7R9 (UniProtKB/TrEMBL),   A0A480ZMY4 (UniProtKB/TrEMBL),   A0A5G2QNS2 (UniProtKB/TrEMBL),   A0A8D0WZX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021613   ⟸   ENSSSCT00000024808
RefSeq Acc Id: ENSSSCP00000071760   ⟸   ENSSSCT00000075133
RefSeq Acc Id: ENSSSCP00000063738   ⟸   ENSSSCT00000080336
RefSeq Acc Id: ENSSSCP00000076959   ⟸   ENSSSCT00000106461


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054230 UniProtKB/TrEMBL
  ENSSSCG00025066525 UniProtKB/TrEMBL
  ENSSSCG00030043671 UniProtKB/TrEMBL
  ENSSSCG00035049476 UniProtKB/TrEMBL
  ENSSSCG00040003048 UniProtKB/TrEMBL
  ENSSSCG00055017229 UniProtKB/TrEMBL
  ENSSSCG00060035570 UniProtKB/TrEMBL
  ENSSSCG00070007204 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024808 ENTREZGENE
  ENSSSCT00000024808.4 UniProtKB/TrEMBL
  ENSSSCT00000080336.2 UniProtKB/TrEMBL
  ENSSSCT00000106461 ENTREZGENE
  ENSSSCT00000106461.1 UniProtKB/TrEMBL
  ENSSSCT00015072343.1 UniProtKB/TrEMBL
  ENSSSCT00015072480.1 UniProtKB/TrEMBL
  ENSSSCT00025091341.1 UniProtKB/TrEMBL
  ENSSSCT00030060913.1 UniProtKB/TrEMBL
  ENSSSCT00035065965.1 UniProtKB/TrEMBL
  ENSSSCT00035065969.1 UniProtKB/TrEMBL
  ENSSSCT00040003792.1 UniProtKB/TrEMBL
  ENSSSCT00040003811.1 UniProtKB/TrEMBL
  ENSSSCT00055033919.1 UniProtKB/TrEMBL
  ENSSSCT00060048216.1 UniProtKB/TrEMBL
  ENSSSCT00060048222.1 UniProtKB/TrEMBL
  ENSSSCT00070013869.1 UniProtKB/TrEMBL
  ENSSSCT00070013888.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.50 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_3 UniProtKB/TrEMBL
KEGG Report ssc:100462744 UniProtKB/TrEMBL
NCBI Gene ATG10 ENTREZGENE
PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
  UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
Pfam Autophagy_act_C UniProtKB/TrEMBL
UniProt A0A480ZMY4 ENTREZGENE
  A0A4X1T7R9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T874_PIG UniProtKB/TrEMBL
  A0A5G2QNS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WZX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CX30 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FDM2 ENTREZGENE, UniProtKB/TrEMBL
  D7RA35 ENTREZGENE, UniProtKB/TrEMBL
  I3LC40 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480ZMY4 UniProtKB/TrEMBL
VGNC ID VGNC:85613 ENTREZGENE