HES2 (hes family bHLH transcription factor 2) - Rat Genome Database

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Gene: HES2 (hes family bHLH transcription factor 2) Sus scrofa
Analyze
Symbol: HES2
Name: hes family bHLH transcription factor 2
RGD ID: 14098394
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hairy and enhancer of split 2; transcription factor HES-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,276,777 - 67,279,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,276,774 - 67,279,617 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,229,965 - 62,231,952 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HES2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,276,777 - 67,279,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,276,774 - 67,279,617 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,229,965 - 62,231,952 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HES2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,415,232 - 6,419,919 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,412,418 - 6,424,670 (-)EnsemblGRCh38hg38GRCh38
GRCh3716,475,292 - 6,479,979 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,397,883 - 6,402,566 (-)NCBINCBI36Build 36hg18NCBI36
Celera15,589,803 - 5,594,490 (-)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,622,794 - 5,627,481 (-)NCBIHuRef
CHM1_116,463,852 - 6,468,539 (-)NCBICHM1_1
T2T-CHM13v2.015,940,873 - 5,945,560 (-)NCBIT2T-CHM13v2.0
Hes2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,243,324 - 152,246,926 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,243,324 - 152,246,926 (+)EnsemblGRCm39 Ensembl
GRCm384152,158,867 - 152,162,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,158,867 - 152,162,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv374151,532,976 - 151,536,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364151,002,667 - 151,006,269 (+)NCBIMGSCv36mm8
Celera4154,445,172 - 154,448,774 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.92NCBI
Hes2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,947,948 - 167,964,660 (+)NCBIGRCr8
mRatBN7.25162,667,190 - 162,668,235 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,667,190 - 162,668,235 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,370,341 - 165,371,386 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,191,934 - 167,192,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,154,132 - 167,155,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,338,097 - 169,339,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,338,097 - 169,339,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,892,583 - 172,898,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,389,231 - 169,390,276 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,399,418 - 169,400,464 (+)NCBI
Celera5160,899,190 - 160,900,235 (+)NCBICelera
Cytogenetic Map5q36NCBI
Hes2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,160,231 - 6,164,379 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554866,158,863 - 6,161,289 (+)NCBIChiLan1.0ChiLan1.0
HES2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,808,848 - 221,814,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,450,207 - 220,456,162 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,175,124 - 5,179,785 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,431,208 - 6,435,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,429,281 - 6,435,896 (-)Ensemblpanpan1.1panPan2
HES2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,275,645 - 60,279,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,278,043 - 60,279,181 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,285,435 - 60,289,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,491,528 - 60,495,196 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,494,060 - 60,495,062 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,491,012 - 60,494,680 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,357,589 - 60,361,257 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,759,187 - 60,762,855 (-)NCBIUU_Cfam_GSD_1.0
Hes2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,725,287 - 30,731,376 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,209,885 - 1,216,424 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,213,281 - 1,215,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HES2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,325,043 - 125,327,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,325,167 - 125,326,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605429,381,643 - 29,383,685 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hes2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248185,045,170 - 5,047,998 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HES2
52 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 7 2 3 2 1 1 1
Below cutoff 3 2 2 2 8 2

Sequence


RefSeq Acc Id: ENSSSCT00000049564   ⟹   ENSSSCP00000039209
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl667,276,777 - 67,279,603 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079222   ⟹   ENSSSCP00000074179
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl667,278,681 - 67,279,603 (-)Ensembl
RefSeq Acc Id: XM_003127529   ⟹   XP_003127577
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,276,774 - 67,279,617 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003127577   ⟸   XM_003127529
- UniProtKB: A0A287A5I8 (UniProtKB/TrEMBL),   A0A4X1W9X8 (UniProtKB/TrEMBL),   A0A8D1NGK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039209   ⟸   ENSSSCT00000049564
RefSeq Acc Id: ENSSSCP00000074179   ⟸   ENSSSCT00000079222
Protein Domains
bHLH   Orange


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034297 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015075369 UniProtKB/TrEMBL
  ENSSSCG00025077056 UniProtKB/TrEMBL
  ENSSSCG00030072756 UniProtKB/TrEMBL
  ENSSSCG00035002338 UniProtKB/TrEMBL
  ENSSSCG00040035035 UniProtKB/TrEMBL
  ENSSSCG00045020723 UniProtKB/TrEMBL
  ENSSSCG00050064358 UniProtKB/TrEMBL
  ENSSSCG00055004140 UniProtKB/TrEMBL
  ENSSSCG00060042519 UniProtKB/TrEMBL
  ENSSSCG00065061019 UniProtKB/TrEMBL
  ENSSSCG00070029562 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000049564 ENTREZGENE
  ENSSSCT00000049564.3 UniProtKB/TrEMBL
  ENSSSCT00000079222.2 UniProtKB/TrEMBL
  ENSSSCT00015101520.1 UniProtKB/TrEMBL
  ENSSSCT00015101566.1 UniProtKB/TrEMBL
  ENSSSCT00025106961.1 UniProtKB/TrEMBL
  ENSSSCT00025106964.1 UniProtKB/TrEMBL
  ENSSSCT00030101877.1 UniProtKB/TrEMBL
  ENSSSCT00030101886.1 UniProtKB/TrEMBL
  ENSSSCT00035002930.1 UniProtKB/TrEMBL
  ENSSSCT00035002932.1 UniProtKB/TrEMBL
  ENSSSCT00040047115.1 UniProtKB/TrEMBL
  ENSSSCT00040047161.1 UniProtKB/TrEMBL
  ENSSSCT00040047229.1 UniProtKB/TrEMBL
  ENSSSCT00045035363.1 UniProtKB/TrEMBL
  ENSSSCT00045035402.1 UniProtKB/TrEMBL
  ENSSSCT00045035439.1 UniProtKB/TrEMBL
  ENSSSCT00050087637.1 UniProtKB/TrEMBL
  ENSSSCT00055008160.1 UniProtKB/TrEMBL
  ENSSSCT00055008162.1 UniProtKB/TrEMBL
  ENSSSCT00055008167.1 UniProtKB/TrEMBL
  ENSSSCT00060057643.1 UniProtKB/TrEMBL
  ENSSSCT00060057644.1 UniProtKB/TrEMBL
  ENSSSCT00065083589.1 UniProtKB/TrEMBL
  ENSSSCT00070059418.1 UniProtKB/TrEMBL
  ENSSSCT00070059419.1 UniProtKB/TrEMBL
  ENSSSCT00070059421.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  Orange_dom UniProtKB/TrEMBL
KEGG Report ssc:100515666 UniProtKB/TrEMBL
NCBI Gene HES2 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR HES-2 UniProtKB/TrEMBL
Pfam Hairy_orange UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  ORANGE UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
  ORANGE UniProtKB/TrEMBL
Superfamily-SCOP Orange domain-like UniProtKB/TrEMBL
  SSF47459 UniProtKB/TrEMBL
UniProt A0A287A5I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W8L0_PIG UniProtKB/TrEMBL
  A0A4X1W8V9_PIG UniProtKB/TrEMBL
  A0A4X1W9X8 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RA40_PIG UniProtKB/TrEMBL
  A0A8D0Q385_PIG UniProtKB/TrEMBL
  A0A8D1EB50_PIG UniProtKB/TrEMBL
  A0A8D1EDP0_PIG UniProtKB/TrEMBL
  A0A8D1NGK0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VGW5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88855 ENTREZGENE