SLC25A44 (solute carrier family 25 member 44) - Rat Genome Database

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Gene: SLC25A44 (solute carrier family 25 member 44) Sus scrofa
Analyze
Symbol: SLC25A44
Name: solute carrier family 25 member 44
RGD ID: 14097205
Description: ENCODES a protein that exhibits branched-chain amino acid transmembrane transporter activity (inferred); INVOLVED IN regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,837,004 - 93,857,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,579,411 - 102,599,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,837,004 - 93,857,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,579,411 - 102,599,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,194,104 - 156,212,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,193,932 - 156,212,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,163,895 - 156,182,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,430,523 - 154,449,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,236,709 - 129,255,567 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,525,453 - 127,544,319 (+)NCBIHuRef
CHM1_11157,559,700 - 157,578,555 (+)NCBICHM1_1
T2T-CHM13v2.01155,332,555 - 155,351,250 (+)NCBIT2T-CHM13v2.0
Slc25a44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,317,801 - 88,334,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,317,805 - 88,332,446 (-)EnsemblGRCm39 Ensembl
GRCm38388,410,494 - 88,425,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,410,498 - 88,425,139 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,214,417 - 88,229,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,496,425 - 88,511,045 (-)NCBIMGSCv36mm8
Celera388,450,135 - 88,464,782 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
Slc25a44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,166,136 - 176,180,965 (-)NCBIGRCr8
mRatBN7.22173,868,317 - 173,883,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,868,320 - 173,883,020 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,012,522 - 181,027,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,034,883 - 179,049,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,634,938 - 173,649,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,772,013 - 187,786,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,774,062 - 187,786,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,174,512 - 207,189,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,512,111 - 180,526,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,464,533 - 180,476,814 (-)NCBI
Celera2167,813,048 - 167,827,747 (-)NCBICelera
Cytogenetic Map2q34NCBI
Slc25a44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,347,844 - 2,364,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,347,951 - 2,364,935 (+)NCBIChiLan1.0ChiLan1.0
SLC25A44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,631,670 - 93,653,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,363,568 - 93,385,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,535,399 - 131,556,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,366,043 - 135,387,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,366,049 - 135,387,643 (+)Ensemblpanpan1.1panPan2
SLC25A44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,630,868 - 41,665,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,630,098 - 41,665,791 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,118,651 - 41,155,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,495,306 - 41,532,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,496,715 - 41,532,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,276,605 - 41,313,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,329,782 - 41,366,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,613,895 - 41,651,236 (-)NCBIUU_Cfam_GSD_1.0
Slc25a44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,655,836 - 7,675,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,500,255 - 1,517,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,500,837 - 1,517,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A44
611 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low
Below cutoff 10 1 3 3 2 21 2 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000007113   ⟹   ENSSSCP00000006921
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,810,504 - 93,857,117 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000042897   ⟹   ENSSSCP00000042058
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,838,489 - 93,857,117 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089119   ⟹   ENSSSCP00000062466
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)Ensembl
RefSeq Acc Id: XM_001928054   ⟹   XP_001928089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1493,837,004 - 93,857,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013996984   ⟹   XP_013852438
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1493,837,012 - 93,857,154 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001928089   ⟸   XM_001928054
- UniProtKB: A0A4X1VZF2 (UniProtKB/TrEMBL),   A0A287ADK6 (UniProtKB/TrEMBL),   A0A8X9AEM7 (UniProtKB/TrEMBL),   A0A5G2QCY9 (UniProtKB/TrEMBL),   A0A8D0VNW0 (UniProtKB/TrEMBL),   A0A8D1F6X2 (UniProtKB/TrEMBL),   A0A8D0LHZ6 (UniProtKB/TrEMBL),   A0A8D0U889 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852438   ⟸   XM_013996984
- UniProtKB: A0A4X1VZF2 (UniProtKB/TrEMBL),   A0A287ADK6 (UniProtKB/TrEMBL),   A0A8X9AEM7 (UniProtKB/TrEMBL),   A0A5G2QCY9 (UniProtKB/TrEMBL),   A0A8D0VNW0 (UniProtKB/TrEMBL),   A0A8D1F6X2 (UniProtKB/TrEMBL),   A0A8D0LHZ6 (UniProtKB/TrEMBL),   A0A8D0U889 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062466   ⟸   ENSSSCT00000089119
RefSeq Acc Id: ENSSSCP00000006921   ⟸   ENSSSCT00000007113
RefSeq Acc Id: ENSSSCP00000042058   ⟸   ENSSSCT00000042897


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006494 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012080 UniProtKB/TrEMBL
  ENSSSCG00015058949 UniProtKB/TrEMBL
  ENSSSCG00025002992 UniProtKB/TrEMBL
  ENSSSCG00030014206 UniProtKB/TrEMBL
  ENSSSCG00035034354 UniProtKB/TrEMBL
  ENSSSCG00040054761 UniProtKB/TrEMBL
  ENSSSCG00045028825 UniProtKB/TrEMBL
  ENSSSCG00050008157 UniProtKB/TrEMBL
  ENSSSCG00055000308 UniProtKB/TrEMBL
  ENSSSCG00060077389 UniProtKB/TrEMBL
  ENSSSCG00065026612 UniProtKB/TrEMBL
  ENSSSCG00070027618 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042897 ENTREZGENE
  ENSSSCT00000042897.3 UniProtKB/TrEMBL
  ENSSSCT00000089119 ENTREZGENE
  ENSSSCT00000089119.2 UniProtKB/TrEMBL
  ENSSSCT00005018992.1 UniProtKB/TrEMBL
  ENSSSCT00005019009.1 UniProtKB/TrEMBL
  ENSSSCT00005019011.1 UniProtKB/TrEMBL
  ENSSSCT00015078913.1 UniProtKB/TrEMBL
  ENSSSCT00015079064.1 UniProtKB/TrEMBL
  ENSSSCT00015079188.1 UniProtKB/TrEMBL
  ENSSSCT00025003962.1 UniProtKB/TrEMBL
  ENSSSCT00025003992.1 UniProtKB/TrEMBL
  ENSSSCT00030019537.1 UniProtKB/TrEMBL
  ENSSSCT00030019544.1 UniProtKB/TrEMBL
  ENSSSCT00035045531.1 UniProtKB/TrEMBL
  ENSSSCT00035045533.1 UniProtKB/TrEMBL
  ENSSSCT00040074229.1 UniProtKB/TrEMBL
  ENSSSCT00040074340.1 UniProtKB/TrEMBL
  ENSSSCT00045049208.1 UniProtKB/TrEMBL
  ENSSSCT00045049312.1 UniProtKB/TrEMBL
  ENSSSCT00050011141.1 UniProtKB/TrEMBL
  ENSSSCT00050011176.1 UniProtKB/TrEMBL
  ENSSSCT00055000534.1 UniProtKB/TrEMBL
  ENSSSCT00055000559.1 UniProtKB/TrEMBL
  ENSSSCT00060106519.1 UniProtKB/TrEMBL
  ENSSSCT00060106539.1 UniProtKB/TrEMBL
  ENSSSCT00065035783.1 UniProtKB/TrEMBL
  ENSSSCT00065035791.1 UniProtKB/TrEMBL
  ENSSSCT00070055380.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  SLC25A44 UniProtKB/TrEMBL
KEGG Report ssc:100155112 UniProtKB/TrEMBL
NCBI Gene SLC25A44 ENTREZGENE
PANTHER PTHR46314 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 44 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A287ADK6 ENTREZGENE
  A0A4X1VZF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QCY9 ENTREZGENE
  A0A8D0LHZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U889 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VNW0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F6X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8X9AEM7 ENTREZGENE
UniProt Secondary A0A287ADK6 UniProtKB/TrEMBL
  A0A5G2QCY9 UniProtKB/TrEMBL
  A0A8X9AEM7 UniProtKB/TrEMBL
VGNC ID VGNC:93017 ENTREZGENE