CCDC126 (coiled-coil domain containing 126) - Rat Genome Database

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Gene: CCDC126 (coiled-coil domain containing 126) Sus scrofa
Analyze
Symbol: CCDC126
Name: coiled-coil domain containing 126
RGD ID: 14096950
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 126
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,372,072 - 92,419,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,372,070 - 92,419,241 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,902,339 - 101,924,081 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
CCDC126
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,372,072 - 92,419,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,372,070 - 92,419,241 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,902,339 - 101,924,081 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC126
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38723,597,382 - 23,644,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl723,597,382 - 23,644,708 (+)EnsemblGRCh38hg38GRCh38
GRCh37723,637,001 - 23,684,327 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36723,603,523 - 23,650,852 (+)NCBINCBI36Build 36hg18NCBI36
Celera723,625,775 - 23,673,096 (+)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef723,522,313 - 23,569,396 (+)NCBIHuRef
CHM1_1723,638,113 - 23,685,941 (+)NCBICHM1_1
T2T-CHM13v2.0723,736,740 - 23,784,002 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2723,688,822 - 23,736,136 (+)NCBI
Ccdc126
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39649,296,204 - 49,318,521 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl649,296,208 - 49,318,516 (+)EnsemblGRCm39 Ensembl
GRCm38649,319,269 - 49,341,587 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl649,319,274 - 49,341,582 (+)EnsemblGRCm38mm10GRCm38
MGSCv37649,269,352 - 49,291,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36649,248,939 - 49,271,167 (+)NCBIMGSCv36mm8
Celera649,828,935 - 49,851,111 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.86NCBI
Ccdc126
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8479,628,483 - 79,649,513 (+)NCBIGRCr8
mRatBN7.2478,297,625 - 78,318,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl478,297,551 - 78,318,655 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx483,511,255 - 83,532,262 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0479,286,702 - 79,307,713 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0477,727,037 - 77,748,048 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,982,022 - 79,003,052 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,981,987 - 79,003,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04143,671,032 - 143,692,062 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4477,445,716 - 77,466,746 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera473,232,287 - 73,253,317 (+)NCBICelera
Cytogenetic Map4q24NCBI
Ccdc126
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541025,826,963 - 25,857,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541025,827,309 - 25,857,028 (+)NCBIChiLan1.0ChiLan1.0
CCDC126
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2628,460,921 - 28,505,775 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1776,785,647 - 76,829,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0724,278,808 - 24,323,605 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1723,884,546 - 23,927,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl723,884,546 - 23,927,778 (+)Ensemblpanpan1.1panPan2
CCDC126
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11437,182,823 - 37,287,749 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1437,182,833 - 37,440,599 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1436,722,631 - 36,828,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01437,113,065 - 37,218,818 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1437,113,078 - 37,371,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11437,228,576 - 37,334,039 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01436,924,163 - 37,030,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01437,262,194 - 37,368,133 (+)NCBIUU_Cfam_GSD_1.0
Ccdc126
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511881,467,289 - 81,493,043 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936478679,078 - 704,995 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936478679,085 - 704,262 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC126
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12134,686,876 - 34,727,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2134,686,665 - 34,727,626 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604269,886,099 - 69,927,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc126
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247396,953,004 - 6,991,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247396,954,636 - 6,991,715 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC126
786 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 7 1
Low 10 4 5 2 16 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028274   ⟹   ENSSSCP00000019533
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,372,072 - 92,418,909 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037533   ⟹   ENSSSCP00000037022
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,372,072 - 92,419,236 (+)Ensembl
RefSeq Acc Id: XM_003357478   ⟹   XP_003357526
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,372,070 - 92,419,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102513   ⟹   XP_020958172
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,372,157 - 92,419,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102514   ⟹   XP_020958173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,372,157 - 92,419,241 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003357526   ⟸   XM_003357478
- UniProtKB: A0A286ZZT8 (UniProtKB/TrEMBL),   A0A4X1T3R3 (UniProtKB/TrEMBL),   A0A4X1T3Z7 (UniProtKB/TrEMBL),   I3L682 (UniProtKB/TrEMBL),   A0A8D1AFU6 (UniProtKB/TrEMBL),   A0A8D1LSF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958172   ⟸   XM_021102513
- UniProtKB: A0A286ZZT8 (UniProtKB/TrEMBL),   A0A4X1T3R3 (UniProtKB/TrEMBL),   A0A4X1T3Z7 (UniProtKB/TrEMBL),   I3L682 (UniProtKB/TrEMBL),   A0A8D1AFU6 (UniProtKB/TrEMBL),   A0A8D1LSF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958173   ⟸   XM_021102514
- UniProtKB: A0A286ZZT8 (UniProtKB/TrEMBL),   A0A4X1T3R3 (UniProtKB/TrEMBL),   A0A4X1T3Z7 (UniProtKB/TrEMBL),   I3L682 (UniProtKB/TrEMBL),   A0A8D1AFU6 (UniProtKB/TrEMBL),   A0A8D1LSF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000037022   ⟸   ENSSSCT00000037533
RefSeq Acc Id: ENSSSCP00000019533   ⟸   ENSSSCT00000028274


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029174 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012186 UniProtKB/TrEMBL
  ENSSSCG00015063941 UniProtKB/TrEMBL
  ENSSSCG00025027424 UniProtKB/TrEMBL
  ENSSSCG00030036855 UniProtKB/TrEMBL
  ENSSSCG00035060700 UniProtKB/TrEMBL
  ENSSSCG00040026938 UniProtKB/TrEMBL
  ENSSSCG00045033466 UniProtKB/TrEMBL
  ENSSSCG00050022084 UniProtKB/TrEMBL
  ENSSSCG00055007610 UniProtKB/TrEMBL
  ENSSSCG00060067872 UniProtKB/TrEMBL
  ENSSSCG00065035914 UniProtKB/TrEMBL
  ENSSSCG00070006026 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028274.4 UniProtKB/TrEMBL
  ENSSSCT00000037533 ENTREZGENE
  ENSSSCT00000037533.3 UniProtKB/TrEMBL
  ENSSSCT00005018948.1 UniProtKB/TrEMBL
  ENSSSCT00005018965.1 UniProtKB/TrEMBL
  ENSSSCT00015085843.1 UniProtKB/TrEMBL
  ENSSSCT00015085920.1 UniProtKB/TrEMBL
  ENSSSCT00015086094.1 UniProtKB/TrEMBL
  ENSSSCT00025037165.1 UniProtKB/TrEMBL
  ENSSSCT00025037262.1 UniProtKB/TrEMBL
  ENSSSCT00030051282.1 UniProtKB/TrEMBL
  ENSSSCT00030051308.1 UniProtKB/TrEMBL
  ENSSSCT00035081503.1 UniProtKB/TrEMBL
  ENSSSCT00035081510.1 UniProtKB/TrEMBL
  ENSSSCT00035081523.1 UniProtKB/TrEMBL
  ENSSSCT00040036146.1 UniProtKB/TrEMBL
  ENSSSCT00040036214.1 UniProtKB/TrEMBL
  ENSSSCT00045057255.1 UniProtKB/TrEMBL
  ENSSSCT00045057325.1 UniProtKB/TrEMBL
  ENSSSCT00045057397.1 UniProtKB/TrEMBL
  ENSSSCT00050029812.1 UniProtKB/TrEMBL
  ENSSSCT00050029824.1 UniProtKB/TrEMBL
  ENSSSCT00050029839.1 UniProtKB/TrEMBL
  ENSSSCT00055014856.1 UniProtKB/TrEMBL
  ENSSSCT00055014890.1 UniProtKB/TrEMBL
  ENSSSCT00060092643.1 UniProtKB/TrEMBL
  ENSSSCT00060092650.1 UniProtKB/TrEMBL
  ENSSSCT00060092673.1 UniProtKB/TrEMBL
  ENSSSCT00065048957.1 UniProtKB/TrEMBL
  ENSSSCT00065048961.1 UniProtKB/TrEMBL
  ENSSSCT00065048964.1 UniProtKB/TrEMBL
  ENSSSCT00070011484.1 UniProtKB/TrEMBL
  ENSSSCT00070011498.1 UniProtKB/TrEMBL
InterPro CCDC126 UniProtKB/TrEMBL
  DUF4525 UniProtKB/TrEMBL
KEGG Report ssc:100621460 UniProtKB/TrEMBL
NCBI Gene CCDC126 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 126 UniProtKB/TrEMBL
  PTHR46941 UniProtKB/TrEMBL
Pfam DUF4525 UniProtKB/TrEMBL
UniProt A0A286ZZT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T3R3 ENTREZGENE
  A0A4X1T3Z7 ENTREZGENE
  A0A8D1AFU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LSF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C5Z7_PIG UniProtKB/TrEMBL
  I3L682 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1T3R3 UniProtKB/TrEMBL
  A0A4X1T3Z7 UniProtKB/TrEMBL
VGNC ID VGNC:86253 ENTREZGENE