C13H3orf20 (chromosome 13 C3orf20 homolog) - Rat Genome Database

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Gene: C13H3orf20 (chromosome 13 C3orf20 homolog) Sus scrofa
Analyze
Symbol: C13H3orf20 (Ensembl: C3orf20)
Name: chromosome 13 C3orf20 homolog
RGD ID: 14096931
Description: ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C3orf20 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,788,148 - 69,895,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,777,152 - 69,888,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,134,070 - 77,181,256 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
membrane  (IEA)

References

Genomics

Comparative Map Data
C13H3orf20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,788,148 - 69,895,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,777,152 - 69,888,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,134,070 - 77,181,256 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C3orf20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,675,141 - 14,773,036 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,675,141 - 14,773,036 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,716,648 - 14,814,543 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,691,658 - 14,789,545 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,691,689 - 14,789,546NCBI
Celera314,654,855 - 14,752,777 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,652,380 - 14,750,266 (+)NCBIHuRef
CHM1_1314,667,676 - 14,765,619 (+)NCBICHM1_1
T2T-CHM13v2.0314,677,557 - 14,775,453 (+)NCBIT2T-CHM13v2.0
4930590J08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,877,732 - 91,928,717 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,879,790 - 91,927,706 (+)EnsemblGRCm39 Ensembl
GRCm38691,900,751 - 91,951,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,902,809 - 91,950,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,854,227 - 91,900,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,869,737 - 91,916,229 (+)NCBIMGSCv36mm8
Celera693,798,514 - 93,844,985 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.94NCBI
C4h3orf20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,976,326 - 126,027,796 (+)NCBIGRCr8
mRatBN7.24124,422,033 - 124,470,657 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,432,193 - 124,469,254 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,899,141 - 129,936,164 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,673,573 - 125,710,596 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,298,102 - 124,335,127 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,790,516 - 123,839,149 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,801,174 - 123,837,662 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,422,410 - 189,471,018 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,105,132 - 126,151,107 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4113,350,111 - 113,387,172 (+)NCBICelera
Cytogenetic Map4q34NCBI
CUNH3orf20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,231,820 - 17,272,343 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,222,834 - 17,271,320 (+)NCBIChiLan1.0ChiLan1.0
C2H3orf20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,653,140 - 14,755,047 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,661,744 - 14,759,810 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,600,078 - 14,695,130 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,936,746 - 15,034,701 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,936,746 - 15,034,701 (+)Ensemblpanpan1.1panPan2
C20H3orf20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,778,660 - 4,856,887 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,788,521 - 4,856,886 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,816,558 - 4,894,135 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,800,619 - 4,878,166 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,809,736 - 4,878,165 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,519,139 - 4,596,686 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,841,732 - 4,919,288 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,853,260 - 4,930,837 (+)NCBIUU_Cfam_GSD_1.0
CUNH3orf20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,500,808 - 18,532,797 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602383,070 - 408,017 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602382,904 - 408,017 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,625,471 - 50,707,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,626,334 - 50,707,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041115,787,246 - 115,879,782 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH3orf20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,128,706 - 1,165,688 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,125,842 - 1,173,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C13H3orf20
1730 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low
Below cutoff 3 2 1 4 1 14 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000059990   ⟹   ENSSSCP00000047514
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1369,776,295 - 69,886,362 (-)Ensembl
RefSeq Acc Id: XM_021069369   ⟹   XP_020925028
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11369,777,152 - 69,888,828 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020925028 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00045016376.1
Reference Protein Sequences
RefSeq Acc Id: XP_020925028   ⟸   XM_021069369
- UniProtKB: A0A8D1KVL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047514   ⟸   ENSSSCT00000059990
Protein Domains
FAM194 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040594 Ensembl
  ENSSSCG00045013817 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00045023707.1 UniProtKB/TrEMBL
InterPro FAM194_C UniProtKB/TrEMBL
NCBI Gene C13H3orf20 ENTREZGENE
PANTHER SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 UniProtKB/TrEMBL
  SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 UniProtKB/TrEMBL
Pfam FAM194 UniProtKB/TrEMBL
UniProt A0A8D1KVL7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85933 ENTREZGENE