ATOH1 (atonal bHLH transcription factor 1) - Rat Genome Database

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Gene: ATOH1 (atonal bHLH transcription factor 1) Sus scrofa
Analyze
Symbol: ATOH1
Name: atonal bHLH transcription factor 1
RGD ID: 14096593
Description: ENCODES a protein that exhibits chromatin DNA binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN auditory receptor cell fate determination (ortholog); auditory receptor cell fate specification (ortholog); axon guidance (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 89 (ortholog); Developmental Disabilities (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atonal homolog 1; protein atonal homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8125,768,286 - 125,770,545 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18125,768,232 - 125,770,619 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28135,103,515 - 135,105,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ATOH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8125,768,286 - 125,770,545 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18125,768,232 - 125,770,619 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28135,103,515 - 135,105,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATOH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38493,828,753 - 93,830,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl493,828,753 - 93,830,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37494,749,904 - 94,752,115 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36494,969,101 - 94,970,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 34495,107,255 - 95,108,320NCBI
Celera492,046,181 - 92,047,245 (+)NCBICelera
Cytogenetic Map4q22.2NCBI
HuRef490,487,368 - 90,488,432 (+)NCBIHuRef
CHM1_1494,726,590 - 94,727,654 (+)NCBICHM1_1
T2T-CHM13v2.0497,144,124 - 97,146,335 (+)NCBIT2T-CHM13v2.0
Atoh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39664,706,109 - 64,708,229 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl664,706,109 - 64,708,229 (+)EnsemblGRCm39 Ensembl
GRCm38664,729,125 - 64,731,245 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl664,729,125 - 64,731,245 (+)EnsemblGRCm38mm10GRCm38
MGSCv37664,679,140 - 64,681,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36664,658,735 - 64,660,821 (+)NCBIMGSCv36mm8
Celera666,856,661 - 66,858,758 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map630.03NCBI
Atoh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8495,241,933 - 95,244,028 (+)NCBIGRCr8
mRatBN7.2493,912,068 - 93,914,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl493,912,068 - 93,914,154 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx499,138,821 - 99,140,918 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0494,913,774 - 94,915,871 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0493,336,612 - 93,338,707 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0495,498,003 - 95,500,098 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl495,498,003 - 95,500,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04160,284,441 - 160,286,536 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4494,109,650 - 94,111,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera488,659,055 - 88,661,150 (+)NCBICelera
Cytogenetic Map4q31NCBI
Atoh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554054,461,704 - 4,462,756 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554054,461,704 - 4,462,756 (+)NCBIChiLan1.0ChiLan1.0
ATOH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2391,853,914 - 91,856,688 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1492,132,530 - 92,135,303 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0486,188,534 - 86,191,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1496,863,733 - 96,864,905 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl496,863,762 - 96,864,832 (+)Ensemblpanpan1.1panPan2
ATOH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13216,807,217 - 16,809,294 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3216,807,336 - 16,808,406 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3225,139,203 - 25,141,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03216,985,533 - 16,987,838 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3216,985,749 - 16,986,819 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13216,957,560 - 16,959,866 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03216,773,311 - 16,775,500 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03223,118,806 - 23,121,117 (-)NCBIUU_Cfam_GSD_1.0
Atoh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530124,908,942 - 24,911,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366871,436,009 - 1,437,067 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366871,435,977 - 1,437,138 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATOH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1742,098,057 - 42,104,910 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl742,100,996 - 42,102,060 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603720,456,111 - 20,458,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atoh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475721,517,809 - 21,518,864 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475721,517,650 - 21,519,543 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATOH1
45 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
mesenchyme
nervous system
8 1 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000010069   ⟹   ENSSSCP00000009805
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8125,768,286 - 125,770,545 (-)Ensembl
RefSeq Acc Id: XM_003129319   ⟹   XP_003129367
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18125,768,232 - 125,770,619 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003129367   ⟸   XM_003129319
- UniProtKB: A0A8D1A856 (UniProtKB/TrEMBL),   F1RWW1 (UniProtKB/TrEMBL),   A0A4X1U909 (UniProtKB/TrEMBL),   A0A8D1C5H6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000009805   ⟸   ENSSSCT00000010069
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073218 UniProtKB/TrEMBL
  ENSSSCG00025045198 UniProtKB/TrEMBL
  ENSSSCG00030030518 UniProtKB/TrEMBL
  ENSSSCG00035047647 UniProtKB/TrEMBL
  ENSSSCG00040076281 UniProtKB/TrEMBL
  ENSSSCG00045033135 UniProtKB/TrEMBL
  ENSSSCG00050066346 UniProtKB/TrEMBL
  ENSSSCG00055018682 UniProtKB/TrEMBL
  ENSSSCG00060040713 UniProtKB/TrEMBL
  ENSSSCG00065076534 UniProtKB/TrEMBL
  ENSSSCG00070016056 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010069 ENTREZGENE
  ENSSSCT00000010069.3 UniProtKB/TrEMBL
  ENSSSCT00015098296.1 UniProtKB/TrEMBL
  ENSSSCT00025061322.1 UniProtKB/TrEMBL
  ENSSSCT00030042350.1 UniProtKB/TrEMBL
  ENSSSCT00035063437.1 UniProtKB/TrEMBL
  ENSSSCT00040106192.1 UniProtKB/TrEMBL
  ENSSSCT00045056585.1 UniProtKB/TrEMBL
  ENSSSCT00050090366.1 UniProtKB/TrEMBL
  ENSSSCT00055036541.1 UniProtKB/TrEMBL
  ENSSSCT00060055162.1 UniProtKB/TrEMBL
  ENSSSCT00065105701.1 UniProtKB/TrEMBL
  ENSSSCT00070031530.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro ATOH1 UniProtKB/TrEMBL
  bHLH_dom UniProtKB/TrEMBL
  bHLH_transcription_factors UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100515497 UniProtKB/TrEMBL
NCBI Gene ATOH1 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF82 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A4X1U909 ENTREZGENE
  A0A8D1A856 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C5H6 ENTREZGENE, UniProtKB/TrEMBL
  F1RWW1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85631 ENTREZGENE