HTR3A (5-hydroxytryptamine receptor 3A) - Rat Genome Database

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Gene: HTR3A (5-hydroxytryptamine receptor 3A) Sus scrofa
Analyze
Symbol: HTR3A
Name: 5-hydroxytryptamine receptor 3A
RGD ID: 14096379
Description: ENCODES a protein that exhibits serotonin-gated monoatomic cation channel activity (ortholog); INVOLVED IN behavioral response to ethanol (ortholog); cellular response to growth factor stimulus (ortholog); monoatomic ion transmembrane transport (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); amphetamine abuse (ortholog); autistic disorder (ortholog); FOUND IN axon (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5-hydroxytryptamine receptor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,576,796 - 41,589,538 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,575,085 - 41,589,083 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,389,414 - 46,403,415 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HTR3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,576,796 - 41,589,538 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,575,085 - 41,589,083 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,389,414 - 46,403,415 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HTR3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,975,108 - 113,990,313 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,975,075 - 113,990,313 (+)EnsemblGRCh38hg38GRCh38
GRCh3711113,845,830 - 113,861,035 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,351,120 - 113,366,245 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411113,351,119 - 113,366,242NCBI
Celera11110,998,666 - 111,013,897 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,774,553 - 109,789,782 (+)NCBIHuRef
CHM1_111113,729,890 - 113,745,126 (+)NCBICHM1_1
T2T-CHM13v2.011113,985,458 - 114,000,652 (+)NCBIT2T-CHM13v2.0
Htr3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,810,513 - 48,822,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,810,513 - 48,822,399 (-)EnsemblGRCm39 Ensembl
GRCm38948,899,213 - 48,911,152 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,899,213 - 48,911,099 (-)EnsemblGRCm38mm10GRCm38
MGSCv37948,707,318 - 48,719,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,651,146 - 48,662,968 (-)NCBIMGSCv36mm8
Celera946,196,535 - 46,208,676 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.53NCBI
Htr3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,138,514 - 58,150,960 (-)NCBIGRCr8
mRatBN7.2849,242,018 - 49,254,475 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,242,020 - 49,254,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx854,747,862 - 54,760,233 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,026,735 - 53,039,101 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,890,989 - 50,903,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,211,436 - 53,223,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,211,438 - 53,223,804 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0851,803,895 - 51,816,278 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,161,147 - 52,173,514 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,180,200 - 52,192,425 (-)NCBI
Celera848,799,808 - 48,812,052 (-)NCBICelera
Cytogenetic Map8q23NCBI
Htr3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,589,117 - 15,602,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,589,117 - 15,602,211 (+)NCBIChiLan1.0ChiLan1.0
HTR3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,713,868 - 114,733,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,808,270 - 115,827,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,851,954 - 108,869,119 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,696,271 - 112,711,507 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,695,891 - 112,711,695 (+)Ensemblpanpan1.1panPan2
HTR3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,324,087 - 19,338,250 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,324,444 - 19,338,294 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,248,270 - 19,261,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,345,236 - 19,358,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,345,236 - 19,359,053 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,409,269 - 19,422,833 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,311,211 - 19,324,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,357,640 - 19,371,211 (-)NCBIUU_Cfam_GSD_1.0
HTR3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,359,139 - 105,375,217 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,359,730 - 105,374,664 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604320,649,879 - 20,665,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Htr3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,470,344 - 9,483,595 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247849,470,440 - 9,483,132 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HTR3A
406 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low 3
Below cutoff 1 4

Sequence


RefSeq Acc Id: ENSSSCT00000025422   ⟹   ENSSSCP00000027540
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,576,796 - 41,589,538 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000096341   ⟹   ENSSSCP00000078771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,577,188 - 41,589,538 (+)Ensembl
RefSeq Acc Id: XM_003357301   ⟹   XP_003357349
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1941,575,085 - 41,589,083 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003357349 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAR97918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000027540.3
  ENSSSCP00000078771
  ENSSSCP00000078771.1
  ENSSSCP00015005855.1
  ENSSSCP00055016457.1
  ENSSSCP00065021493.1
  ENSSSCP00070009752.1
RefSeq Acc Id: XP_003357349   ⟸   XM_003357301
- UniProtKB: A0A480E0E3 (UniProtKB/TrEMBL),   A0A4X1T4H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027540   ⟸   ENSSSCT00000025422
RefSeq Acc Id: ENSSSCP00000078771   ⟸   ENSSSCT00000096341

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024497 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015011504 UniProtKB/TrEMBL
  ENSSSCG00055010621 UniProtKB/TrEMBL
  ENSSSCG00065036460 UniProtKB/TrEMBL
  ENSSSCG00070006216 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025422.4 UniProtKB/TrEMBL
  ENSSSCT00000096341 ENTREZGENE
  ENSSSCT00000096341.1 UniProtKB/TrEMBL
  ENSSSCT00015015112.1 UniProtKB/TrEMBL
  ENSSSCT00055020802.1 UniProtKB/TrEMBL
  ENSSSCT00065049678.1 UniProtKB/TrEMBL
  ENSSSCT00070011831.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro 5HT3_rcpt UniProtKB/TrEMBL
  5HT3_rcpt_A UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
KEGG Report ssc:100625131 UniProtKB/TrEMBL
NCBI Gene HTR3A ENTREZGENE
PANTHER 5-HYDROXYTRYPTAMINE RECEPTOR 3A UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS 5HT3ARECEPTR UniProtKB/TrEMBL
  5HT3RECEPTOR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A480E0E3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T4H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FH60_PIG UniProtKB/TrEMBL
  I3LTU2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89000 ENTREZGENE