SLC51B (SLC51 subunit beta) - Rat Genome Database

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Gene: SLC51B (SLC51 subunit beta) Sus scrofa
Analyze
Symbol: SLC51B
Name: SLC51 subunit beta (Ensembl:solute carrier family 51 subunit beta)
RGD ID: 14096337
Description: ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); INVOLVED IN organic substance transport (ortholog); positive regulation of protein exit from endoplasmic reticulum (ortholog); positive regulation of protein glycosylation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); cholestasis (ortholog); cognitive disorder (ortholog); FOUND IN basolateral plasma membrane (inferred); membrane (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: organic solute transporter subunit beta; solute carrier family 51 beta subunit; solute carrier family 51 subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,081,180 - 163,089,488 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,081,145 - 163,089,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC51B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,081,180 - 163,089,488 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,081,145 - 163,089,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC51B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,045,387 - 65,053,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,045,387 - 65,053,397 (+)EnsemblGRCh38hg38GRCh38
GRCh371565,337,725 - 65,345,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,129,366 - 63,132,592 (+)NCBINCBI36Build 36hg18NCBI36
Celera1542,215,879 - 42,223,900 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,162,361 - 42,170,379 (+)NCBIHuRef
CHM1_11565,457,493 - 65,465,519 (+)NCBICHM1_1
T2T-CHM13v2.01562,854,823 - 62,862,823 (+)NCBIT2T-CHM13v2.0
Slc51b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,320,035 - 65,330,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,319,996 - 65,330,237 (-)EnsemblGRCm39 Ensembl
GRCm38965,412,753 - 65,422,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,412,714 - 65,422,955 (-)EnsemblGRCm38mm10GRCm38
MGSCv37965,260,560 - 65,270,580 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36965,210,759 - 65,220,779 (-)NCBIMGSCv36mm8
Celera962,642,443 - 62,652,442 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map935.29NCBI
Slc51b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,827,047 - 74,835,109 (-)NCBIGRCr8
mRatBN7.2865,931,891 - 65,939,953 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,931,890 - 65,940,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx871,444,206 - 71,452,262 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0869,717,217 - 69,725,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0867,586,898 - 67,594,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0870,930,196 - 70,938,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl870,930,347 - 70,932,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0870,622,113 - 70,630,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4869,661,815 - 69,669,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera865,329,645 - 65,337,941 (-)NCBICelera
Cytogenetic Map8q24NCBI
Slc51b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,365,554 - 10,374,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,365,554 - 10,374,209 (-)NCBIChiLan1.0ChiLan1.0
SLC51B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21654,291,659 - 54,299,283 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11558,463,240 - 58,470,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01543,988,512 - 43,992,939 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11562,268,738 - 62,277,160 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1562,268,738 - 62,277,160 (+)Ensemblpanpan1.1panPan2
SLC51B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13029,425,489 - 29,436,204 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3029,425,860 - 29,436,073 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3029,342,976 - 29,366,128 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,602,279 - 29,625,401 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,615,074 - 29,625,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,535,026 - 29,558,167 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,596,496 - 29,619,801 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03029,837,521 - 29,860,670 (+)NCBIUU_Cfam_GSD_1.0
Slc51b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,507,751 - 107,531,583 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647125,355,761 - 25,381,763 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647125,355,849 - 25,379,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC51B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12618,533,254 - 18,541,881 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2618,529,642 - 18,536,877 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048122,891,731 - 122,900,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SLC51B
122 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 2
Low 5 1 3 18 3
Below cutoff 3 1 2 1 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005433   ⟹   ENSSSCP00000005298
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1163,081,180 - 163,089,488 (+)Ensembl
RefSeq Acc Id: XM_003121716   ⟹   XP_003121764
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11163,081,166 - 163,089,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005658570   ⟹   XP_005658627
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11163,081,145 - 163,089,491 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005658627   ⟸   XM_005658570
- UniProtKB: A0A4X1THR6 (UniProtKB/TrEMBL),   F1SM33 (UniProtKB/TrEMBL),   A0A8D1ETN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121764   ⟸   XM_003121716
- UniProtKB: A0A4X1THR6 (UniProtKB/TrEMBL),   F1SM33 (UniProtKB/TrEMBL),   A0A8D1ETN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005298   ⟸   ENSSSCT00000005433


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041636 UniProtKB/TrEMBL
  ENSSSCG00015079147 UniProtKB/TrEMBL
  ENSSSCG00025016625 UniProtKB/TrEMBL
  ENSSSCG00030051632 UniProtKB/TrEMBL
  ENSSSCG00035070487 UniProtKB/TrEMBL
  ENSSSCG00040048526 UniProtKB/TrEMBL
  ENSSSCG00045006182 UniProtKB/TrEMBL
  ENSSSCG00050035908 UniProtKB/TrEMBL
  ENSSSCG00055026333 UniProtKB/TrEMBL
  ENSSSCG00060049163 UniProtKB/TrEMBL
  ENSSSCG00065034958 UniProtKB/TrEMBL
  ENSSSCG00070009557 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005433 ENTREZGENE
  ENSSSCT00000005433.3 UniProtKB/TrEMBL
  ENSSSCT00005066649.1 UniProtKB/TrEMBL
  ENSSSCT00005066669.1 UniProtKB/TrEMBL
  ENSSSCT00005066684.1 UniProtKB/TrEMBL
  ENSSSCT00015107327.1 UniProtKB/TrEMBL
  ENSSSCT00025022366.1 UniProtKB/TrEMBL
  ENSSSCT00030071934.1 UniProtKB/TrEMBL
  ENSSSCT00035095243.1 UniProtKB/TrEMBL
  ENSSSCT00040065401.1 UniProtKB/TrEMBL
  ENSSSCT00045010242.1 UniProtKB/TrEMBL
  ENSSSCT00050048276.1 UniProtKB/TrEMBL
  ENSSSCT00055052023.1 UniProtKB/TrEMBL
  ENSSSCT00060066750.1 UniProtKB/TrEMBL
  ENSSSCT00065047581.1 UniProtKB/TrEMBL
  ENSSSCT00070018546.1 UniProtKB/TrEMBL
  ENSSSCT00070018555.1 UniProtKB/TrEMBL
InterPro OSTbeta UniProtKB/TrEMBL
NCBI Gene SLC51B ENTREZGENE
PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA UniProtKB/TrEMBL
  ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA-RELATED UniProtKB/TrEMBL
Pfam OSTbeta UniProtKB/TrEMBL
UniProt A0A4X1THR6 ENTREZGENE
  A0A8D1ETN5 ENTREZGENE, UniProtKB/TrEMBL
  F1SM33 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1THR6 UniProtKB/TrEMBL
VGNC ID VGNC:93139 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-18 SLC51B  SLC51 subunit beta  SLC51B  solute carrier family 51 subunit beta  Symbol and/or name change 19259463 PROVISIONAL
2020-02-25 SLC51B  solute carrier family 51 subunit beta  SLC51B  solute carrier family 51 beta subunit  Symbol and/or name change 5135510 APPROVED