MAB21L2 (mab-21 like 2) - Rat Genome Database

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Gene: MAB21L2 (mab-21 like 2) Sus scrofa
Analyze
Symbol: MAB21L2
Name: mab-21 like 2
RGD ID: 14096005
Description: INVOLVED IN camera-type eye development (ortholog); cell population proliferation (ortholog); embryonic body morphogenesis (ortholog); ASSOCIATED WITH coloboma (ortholog); common variable immunodeficiency 8 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein mab-21-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl878,385,764 - 78,386,843 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1878,385,176 - 78,388,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2883,283,991 - 83,286,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
MAB21L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl878,385,764 - 78,386,843 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1878,385,176 - 78,388,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2883,283,991 - 83,286,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAB21L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384150,582,151 - 150,584,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4150,582,151 - 150,584,693 (+)EnsemblGRCh38hg38GRCh38
GRCh374151,503,303 - 151,505,845 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364151,722,753 - 151,725,295 (+)NCBINCBI36Build 36hg18NCBI36
Build 344151,860,907 - 151,863,448NCBI
Celera4148,822,534 - 148,825,268 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4147,228,721 - 147,231,488 (+)NCBIHuRef
CHM1_14151,479,535 - 151,482,302 (+)NCBICHM1_1
T2T-CHM13v2.04153,905,998 - 153,908,540 (+)NCBIT2T-CHM13v2.0
Mab21l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,453,357 - 86,455,590 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl386,452,888 - 86,455,590 (-)EnsemblGRCm39 Ensembl
GRCm38386,546,050 - 86,548,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,545,581 - 86,548,629 (-)EnsemblGRCm38mm10GRCm38
MGSCv37386,349,503 - 86,352,205 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36386,631,508 - 86,634,210 (-)NCBIMGSCv36mm8
Celera386,553,298 - 86,556,000 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.86NCBI
Mab21l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82174,244,538 - 174,247,620 (-)NCBIGRCr8
mRatBN7.22171,946,573 - 171,949,655 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2171,946,573 - 171,949,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2179,092,824 - 179,095,907 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02177,115,186 - 177,118,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02171,714,775 - 171,717,860 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02185,849,749 - 185,852,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2185,850,232 - 185,852,759 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02205,249,151 - 205,252,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42178,522,370 - 178,525,454 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2165,911,020 - 165,914,104 (-)NCBICelera
Cytogenetic Map2q34NCBI
Mab21l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554715,297,259 - 5,298,338 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554715,296,292 - 5,298,432 (+)NCBIChiLan1.0ChiLan1.0
MAB21L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23148,450,205 - 148,453,668 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14148,813,640 - 148,816,244 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04142,913,376 - 142,916,001 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14154,562,841 - 154,565,609 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4154,563,939 - 154,565,018 (+)Ensemblpanpan1.1panPan2
MAB21L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11548,538,912 - 48,541,651 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1548,539,955 - 48,541,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1548,875,976 - 48,878,718 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01549,213,787 - 49,216,530 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1549,214,834 - 49,215,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11548,483,352 - 48,486,092 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01548,577,131 - 48,579,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01548,901,060 - 48,903,801 (+)NCBIUU_Cfam_GSD_1.0
Mab21l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530141,834,406 - 41,837,060 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936689695,172 - 696,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936689694,119 - 696,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAB21L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1797,173,010 - 97,177,863 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl797,176,195 - 97,177,274 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603776,778,621 - 76,781,415 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mab21l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248582,075,456 - 2,076,535 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248582,074,510 - 2,077,282 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MAB21L2
42 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3
Low 9 3 3 5 1 12 2 3 3
Below cutoff 1 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009881   ⟹   ENSSSCP00000009626
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl878,381,994 - 78,387,069 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000104833   ⟹   ENSSSCP00000078712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl878,385,764 - 78,386,843 (-)Ensembl
RefSeq Acc Id: XM_021100652   ⟹   XP_020956311
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1878,385,176 - 78,388,008 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020956311   ⟸   XM_021100652
- UniProtKB: A0A4X1SK67 (UniProtKB/TrEMBL),   F2Z5C6 (UniProtKB/TrEMBL),   F2Z593 (UniProtKB/TrEMBL),   A0A8D0SIQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000009626   ⟸   ENSSSCT00000009881
RefSeq Acc Id: ENSSSCP00000078712   ⟸   ENSSSCT00000104833
Protein Domains
Mab-21-like HhH/H2TH-like   Mab-21-like nucleotidyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009022 Ensembl
  ENSSSCG00000009351 UniProtKB/TrEMBL
  ENSSSCG00000052676 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005004802 UniProtKB/TrEMBL
  ENSSSCG00015023597 UniProtKB/TrEMBL
  ENSSSCG00025054751 UniProtKB/TrEMBL
  ENSSSCG00030028233 UniProtKB/TrEMBL
  ENSSSCG00035027652 UniProtKB/TrEMBL
  ENSSSCG00040030415 UniProtKB/TrEMBL
  ENSSSCG00045011663 UniProtKB/TrEMBL
  ENSSSCG00050011974 UniProtKB/TrEMBL
  ENSSSCG00055014678 UniProtKB/TrEMBL
  ENSSSCG00060038389 UniProtKB/TrEMBL
  ENSSSCG00065079161 UniProtKB/TrEMBL
  ENSSSCG00070001793 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010248.3 UniProtKB/TrEMBL
  ENSSSCT00000104833 ENTREZGENE
  ENSSSCT00000104833.1 UniProtKB/TrEMBL
  ENSSSCT00005007112.1 UniProtKB/TrEMBL
  ENSSSCT00015031234.1 UniProtKB/TrEMBL
  ENSSSCT00025074889.1 UniProtKB/TrEMBL
  ENSSSCT00030039460.1 UniProtKB/TrEMBL
  ENSSSCT00035036561.1 UniProtKB/TrEMBL
  ENSSSCT00040040870.1 UniProtKB/TrEMBL
  ENSSSCT00045019738.1 UniProtKB/TrEMBL
  ENSSSCT00050016115.1 UniProtKB/TrEMBL
  ENSSSCT00055028921.1 UniProtKB/TrEMBL
  ENSSSCT00060051887.1 UniProtKB/TrEMBL
  ENSSSCT00065110015.1 UniProtKB/TrEMBL
  ENSSSCT00070003343.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
  3.30.460.90 UniProtKB/TrEMBL
InterPro Mab-21-like_nuc_Trfase UniProtKB/TrEMBL
  Mab-21_dom UniProtKB/TrEMBL
  Mab-21_HhH/H2TH-like UniProtKB/TrEMBL
NCBI Gene MAB21L2 ENTREZGENE
PANTHER CELL FATE DETERMINING PROTEIN MAB21-RELATED UniProtKB/TrEMBL
  NUCLEOTIDYLTRANSFERASE MAB21L1-RELATED UniProtKB/TrEMBL
  PTHR10656:SF37 UniProtKB/TrEMBL
Pfam Mab-21 UniProtKB/TrEMBL
  Mab-21_C UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART Mab-21 UniProtKB/TrEMBL
UniProt A0A4X1SK67 ENTREZGENE
  A0A8D0SIQ0 ENTREZGENE, UniProtKB/TrEMBL
  F2Z593 ENTREZGENE, UniProtKB/TrEMBL
  F2Z5C6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SK67 UniProtKB/TrEMBL
VGNC ID VGNC:89933 ENTREZGENE