CABLES1 (Cdk5 and Abl enzyme substrate 1) - Rat Genome Database

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Gene: CABLES1 (Cdk5 and Abl enzyme substrate 1) Sus scrofa
Analyze
Symbol: CABLES1
Name: Cdk5 and Abl enzyme substrate 1
RGD ID: 14095872
Description: INVOLVED IN nervous system development (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDK5 and ABL1 enzyme substrate 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,116,444 - 108,227,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,116,344 - 108,228,832 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26100,634,496 - 100,727,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CABLES1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,116,444 - 108,227,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,116,344 - 108,228,832 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26100,634,496 - 100,727,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CABLES1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,134,564 - 23,260,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,134,564 - 23,260,470 (+)EnsemblGRCh38hg38GRCh38
GRCh371820,714,528 - 20,840,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361818,969,725 - 19,092,615 (+)NCBINCBI36Build 36hg18NCBI36
Build 341818,989,786 - 19,092,614NCBI
Celera1817,551,596 - 17,656,291 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1817,569,503 - 17,695,108 (+)NCBIHuRef
CHM1_11820,641,871 - 20,767,758 (+)NCBICHM1_1
T2T-CHM13v2.01823,327,896 - 23,454,570 (+)NCBIT2T-CHM13v2.0
Cables1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391811,972,600 - 12,078,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1811,972,277 - 12,078,687 (+)EnsemblGRCm39 Ensembl
GRCm381811,839,274 - 11,945,627 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1811,839,220 - 11,945,630 (+)EnsemblGRCm38mm10GRCm38
MGSCv371811,997,783 - 12,104,136 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361811,982,810 - 12,089,100 (+)NCBIMGSCv36mm8
MGSCv361811,851,108 - 11,958,075 (+)NCBIMGSCv36mm8
Celera1812,078,718 - 12,185,440 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.88NCBI
Cables1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,349,681 - 3,455,956 (+)NCBIGRCr8
mRatBN7.2183,076,556 - 3,181,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,075,524 - 3,181,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,316,122 - 3,419,293 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,103,815 - 4,206,986 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,336,580 - 3,440,755 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,317,724 - 3,421,721 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,317,724 - 3,421,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,328,555 - 3,432,388 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,425,890 - 3,529,998 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,425,895 - 3,528,968 (+)NCBI
Celera182,944,083 - 3,047,971 (+)NCBICelera
Cytogenetic Map18p13NCBI
Cables1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540211,414,271 - 11,513,030 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540211,415,913 - 11,514,132 (+)NCBIChiLan1.0ChiLan1.0
CABLES1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21740,563,858 - 40,688,310 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,256,172 - 26,380,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,384,305 - 16,508,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,013,292 - 20,137,092 (+)NCBIpanpan1.1PanPan1.1panPan2
CABLES1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1765,006,301 - 65,124,440 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl765,008,804 - 65,124,563 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha764,460,648 - 64,526,224 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0765,071,395 - 65,136,731 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl765,072,698 - 65,188,006 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,739,109 - 64,804,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,761,016 - 64,826,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0765,059,557 - 65,125,060 (-)NCBIUU_Cfam_GSD_1.0
Cables1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494461,057,544 - 61,166,019 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365502,653,321 - 2,756,805 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365502,650,061 - 2,759,557 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABLES1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11857,253,843 - 57,378,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1857,257,081 - 57,378,855 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605032,005,982 - 32,131,029 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cables1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247708,837,220 - 8,935,886 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247708,837,425 - 8,937,106 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CABLES1
3240 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 3 3 5 2 23 2 3 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000004104   ⟹   ENSSSCP00000004012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6108,116,444 - 108,227,744 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000064133   ⟹   ENSSSCP00000059273
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6108,184,388 - 108,224,884 (+)Ensembl
RefSeq Acc Id: XM_021097743   ⟹   XP_020953402
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16108,116,344 - 108,228,832 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020953402   ⟸   XM_021097743
- UniProtKB: A0A4X1VQ21 (UniProtKB/TrEMBL),   A0A480W3I8 (UniProtKB/TrEMBL),   A0A8D1FW19 (UniProtKB/TrEMBL),   F1SBB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000059273   ⟸   ENSSSCT00000064133
RefSeq Acc Id: ENSSSCP00000004012   ⟸   ENSSSCT00000004104
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025039046 UniProtKB/TrEMBL
  ENSSSCG00040069685 UniProtKB/TrEMBL
  ENSSSCG00045003318 UniProtKB/TrEMBL
  ENSSSCG00050075521 UniProtKB/TrEMBL
  ENSSSCG00055029130 UniProtKB/TrEMBL
  ENSSSCG00060063232 UniProtKB/TrEMBL
  ENSSSCG00065067525 UniProtKB/TrEMBL
  ENSSSCG00070025535 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004104 ENTREZGENE
  ENSSSCT00000004104.5 UniProtKB/TrEMBL
  ENSSSCT00025053093.1 UniProtKB/TrEMBL
  ENSSSCT00040095666.1 UniProtKB/TrEMBL
  ENSSSCT00045005413.1 UniProtKB/TrEMBL
  ENSSSCT00045005453.1 UniProtKB/TrEMBL
  ENSSSCT00050103587.1 UniProtKB/TrEMBL
  ENSSSCT00055057833.1 UniProtKB/TrEMBL
  ENSSSCT00055057870.1 UniProtKB/TrEMBL
  ENSSSCT00060086279.1 UniProtKB/TrEMBL
  ENSSSCT00060086308.1 UniProtKB/TrEMBL
  ENSSSCT00065092696.1 UniProtKB/TrEMBL
  ENSSSCT00065092710.1 UniProtKB/TrEMBL
  ENSSSCT00070051045.1 UniProtKB/TrEMBL
  ENSSSCT00070051047.1 UniProtKB/TrEMBL
  ENSSSCT00070051048.1 UniProtKB/TrEMBL
  ENSSSCT00070051051.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro CABLES1/2 UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CABLES1 ENTREZGENE
PANTHER CDK5 AND ABL1 ENZYME SUBSTRATE 1 UniProtKB/TrEMBL
  PTHR22896 UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/TrEMBL
PIRSF Cables UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A480W3I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VIA8_PIG UniProtKB/TrEMBL
  A0A4X1VMB9_PIG UniProtKB/TrEMBL
  A0A4X1VNT9_PIG UniProtKB/TrEMBL
  A0A4X1VQ21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FW19 ENTREZGENE, UniProtKB/TrEMBL
  F1SBB7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86109 ENTREZGENE