TMED2 (transmembrane p24 trafficking protein 2) - Rat Genome Database

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Gene: TMED2 (transmembrane p24 trafficking protein 2) Sus scrofa
Analyze
Symbol: TMED2
Name: transmembrane p24 trafficking protein 2
RGD ID: 14095036
Description: ENCODES a protein that exhibits frizzled binding (ortholog); smoothened binding (ortholog); INVOLVED IN allantois development (ortholog); branching involved in labyrinthine layer morphogenesis (ortholog); chorion development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Myocardial Ischemia (ortholog); FOUND IN COPI-coated vesicle (ortholog); zymogen granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane emp24 domain trafficking protein 2; transmembrane emp24 domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,390,335 - 29,400,440 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,390,903 - 29,400,454 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,082,626 - 31,092,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMED2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,390,335 - 29,400,440 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,390,903 - 29,400,454 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,082,626 - 31,092,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMED2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,584,552 - 123,598,582 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,584,533 - 123,598,582 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,069,099 - 124,083,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,635,029 - 122,648,641 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,594,040 - 122,607,561NCBI
Celera12123,665,514 - 123,679,126 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,030,441 - 121,044,052 (+)NCBIHuRef
CHM1_112123,890,022 - 123,903,633 (+)NCBICHM1_1
T2T-CHM13v2.012123,583,417 - 123,597,447 (+)NCBIT2T-CHM13v2.0
Tmed2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,678,835 - 124,688,566 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,678,758 - 124,688,569 (+)EnsemblGRCm39 Ensembl
GRCm385124,540,791 - 124,550,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,540,695 - 124,550,506 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,990,800 - 125,000,512 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,801,409 - 124,811,121 (+)NCBIMGSCv36mm8
Celera5121,616,969 - 121,626,684 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.65NCBI
Tmed2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,713,522 - 37,722,606 (-)NCBIGRCr8
mRatBN7.21232,052,542 - 32,061,628 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,052,543 - 32,071,903 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,231,743 - 33,240,850 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,843,066 - 33,852,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,894,932 - 32,904,047 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,471,259 - 37,480,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,471,260 - 37,480,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,342,087 - 39,351,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,165,291 - 33,174,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,028,678 - 33,037,714 (-)NCBI
Celera1233,742,602 - 33,751,640 (-)NCBICelera
Cytogenetic Map12q15NCBI
Tmed2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,404,739 - 5,415,243 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,404,739 - 5,415,243 (-)NCBIChiLan1.0ChiLan1.0
TMED2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,656,040 - 131,673,075 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,655,269 - 131,669,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,169,915 - 121,183,524 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,397,391 - 125,410,799 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,397,391 - 125,410,794 (+)Ensemblpanpan1.1panPan2
TMED2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,039,046 - 6,047,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,039,405 - 6,047,459 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,200,941 - 6,210,349 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,288,140 - 6,297,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,287,725 - 6,297,549 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,221,613 - 6,231,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,314,000 - 6,323,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,267,212 - 6,276,621 (-)NCBIUU_Cfam_GSD_1.0
Tmed2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,247,895 - 158,256,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,223,114 - 1,231,479 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,223,114 - 1,258,699 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,913,145 - 118,927,335 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,913,078 - 118,928,281 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,348,858 - 126,363,072 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmed2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,389,262 - 23,399,955 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,389,262 - 23,399,962 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMED2
239 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000010714   ⟹   ENSSSCP00000010435
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1429,390,335 - 29,400,440 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091916   ⟹   ENSSSCP00000077573
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1429,390,335 - 29,400,339 (-)Ensembl
RefSeq Acc Id: XM_003359088   ⟹   XP_003359136
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11429,390,903 - 29,400,454 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003359136 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000010435
  ENSSSCP00000010435.4
  ENSSSCP00000077573.1
  ENSSSCP00035020428.1
  ENSSSCP00045048413.1
  ENSSSCP00060004393.1
  ENSSSCP00065017197.1
GenBank Protein JAG69098 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003359136   ⟸   XM_003359088
- UniProtKB: A0A8W4FFC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010435   ⟸   ENSSSCT00000010714
RefSeq Acc Id: ENSSSCP00000077573   ⟸   ENSSSCT00000091916
Protein Domains
GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035038416 UniProtKB/TrEMBL
  ENSSSCG00045039163 UniProtKB/TrEMBL
  ENSSSCG00060009150 UniProtKB/TrEMBL
  ENSSSCG00065030127 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010714 ENTREZGENE
  ENSSSCT00000010714.4 UniProtKB/TrEMBL
  ENSSSCT00000091916.1 UniProtKB/TrEMBL
  ENSSSCT00035050979.1 UniProtKB/TrEMBL
  ENSSSCT00045068099.1 UniProtKB/TrEMBL
  ENSSSCT00060011775.1 UniProtKB/TrEMBL
  ENSSSCT00065040654.1 UniProtKB/TrEMBL
InterPro GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
  TMP21-related UniProtKB/TrEMBL
KEGG Report ssc:100625917 UniProtKB/TrEMBL
NCBI Gene TMED2 ENTREZGENE
PANTHER PTHR22811 UniProtKB/TrEMBL
  TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam EMP24_GP25L UniProtKB/TrEMBL
PROSITE GOLD UniProtKB/TrEMBL
SMART EMP24_GP25L UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
UniProt A0A8D2C4M7_PIG UniProtKB/TrEMBL
  A0A8W4FFC7 ENTREZGENE, UniProtKB/TrEMBL
  F2Z501_PIG UniProtKB/TrEMBL
VGNC ID VGNC:111151 ENTREZGENE