MRPL55 (mitochondrial ribosomal protein L55) - Rat Genome Database

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Gene: MRPL55 (mitochondrial ribosomal protein L55) Sus scrofa
Analyze
Symbol: MRPL55
Name: mitochondrial ribosomal protein L55
RGD ID: 14094874
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); FOUND IN synapse (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 39S ribosomal protein L55, mitochondrial; large ribosomal subunit protein mL55
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,106,685 - 228,109,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,106,679 - 228,109,312 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,294,386 - 228,297,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,361,003 - 226,363,627 (-)NCBINCBI36Build 36hg18NCBI36
Celera1201,484,612 - 201,487,245 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,809,501 - 198,812,134 (-)NCBIHuRef
CHM1_11229,566,725 - 229,569,358 (-)NCBICHM1_1
T2T-CHM13v2.01227,295,671 - 227,315,175 (-)NCBIT2T-CHM13v2.0
Mrpl55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,093,312 - 59,096,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,093,312 - 59,096,960 (+)EnsemblGRCm39 Ensembl
GRCm381159,202,486 - 59,206,138 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,202,486 - 59,206,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,016,019 - 59,019,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,018,712 - 59,022,197 (+)NCBIMGSCv36mm8
Celera1163,967,585 - 63,971,075 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
Mrpl55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,488,252 - 44,491,401 (+)NCBIGRCr8
mRatBN7.21043,988,676 - 43,991,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,988,683 - 43,991,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,682,503 - 48,685,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,172,861 - 48,176,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,676,458 - 43,679,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,552,794 - 45,555,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,552,795 - 45,555,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,308,861 - 45,312,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,506,262 - 45,509,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,519,887 - 45,522,767 (+)NCBI
Celera1043,251,943 - 43,255,091 (+)NCBICelera
Cytogenetic Map10q22NCBI
Mrpl55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
MRPL55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
MRPL55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
Mrpl55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,766,963 - 87,770,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936864108,645 - 111,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937878,596 - 881,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937878,596 - 881,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL55
68 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 3 1 4 2
Low 9 3 3 2 1 19 2 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000029868   ⟹   ENSSSCP00000020702
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076929   ⟹   ENSSSCP00000061247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl251,243,294 - 51,245,150 (-)Ensembl
RefSeq Acc Id: NM_001244964   ⟹   NP_001231893
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,594 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244965   ⟹   NP_001231894
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,262 - 51,247,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661148   ⟹   XP_005661205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661149   ⟹   XP_005661206
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661151   ⟹   XP_005661208
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661152   ⟹   XP_005661209
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078869   ⟹   XP_020934528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,243,257 - 51,247,590 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005661205   ⟸   XM_005661148
- Peptide Label: isoform X1
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231893   ⟸   NM_001244964
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934528   ⟸   XM_021078869
- Peptide Label: isoform X1
- UniProtKB: A0A4X1ULI6 (UniProtKB/TrEMBL),   I3L9J0 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661206   ⟸   XM_005661149
- Peptide Label: isoform X1
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661208   ⟸   XM_005661151
- Peptide Label: isoform X1
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661209   ⟸   XM_005661152
- Peptide Label: isoform X1
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231894   ⟸   NM_001244965
- UniProtKB: I3L9J0 (UniProtKB/TrEMBL),   A0A4X1ULI6 (UniProtKB/TrEMBL),   A0A5G2QGV9 (UniProtKB/TrEMBL),   A0A8D0XHE2 (UniProtKB/TrEMBL),   A0A8D0J5F2 (UniProtKB/TrEMBL),   A0A8D1NAM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000020702   ⟸   ENSSSCT00000029868
RefSeq Acc Id: ENSSSCP00000061247   ⟸   ENSSSCT00000076929


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005019387 UniProtKB/TrEMBL
  ENSSSCG00015062122 UniProtKB/TrEMBL
  ENSSSCG00025069500 UniProtKB/TrEMBL
  ENSSSCG00030056473 UniProtKB/TrEMBL
  ENSSSCG00035036934 UniProtKB/TrEMBL
  ENSSSCG00040072751 UniProtKB/TrEMBL
  ENSSSCG00045033846 UniProtKB/TrEMBL
  ENSSSCG00050059831 UniProtKB/TrEMBL
  ENSSSCG00055018344 UniProtKB/TrEMBL
  ENSSSCG00060009392 UniProtKB/TrEMBL
  ENSSSCG00065056567 UniProtKB/TrEMBL
  ENSSSCG00070017721 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029868 ENTREZGENE
  ENSSSCT00000029868.4 UniProtKB/TrEMBL
  ENSSSCT00000076929.2 UniProtKB/TrEMBL
  ENSSSCT00005030681.1 UniProtKB/TrEMBL
  ENSSSCT00005030719.1 UniProtKB/TrEMBL
  ENSSSCT00015084243.1 UniProtKB/TrEMBL
  ENSSSCT00015084316.1 UniProtKB/TrEMBL
  ENSSSCT00025095539.1 UniProtKB/TrEMBL
  ENSSSCT00025095680.1 UniProtKB/TrEMBL
  ENSSSCT00030078752.1 UniProtKB/TrEMBL
  ENSSSCT00030078772.1 UniProtKB/TrEMBL
  ENSSSCT00035048980.1 UniProtKB/TrEMBL
  ENSSSCT00035048987.1 UniProtKB/TrEMBL
  ENSSSCT00040100285.1 UniProtKB/TrEMBL
  ENSSSCT00040100357.1 UniProtKB/TrEMBL
  ENSSSCT00045058005.1 UniProtKB/TrEMBL
  ENSSSCT00045058097.1 UniProtKB/TrEMBL
  ENSSSCT00050081510.1 UniProtKB/TrEMBL
  ENSSSCT00050081512.1 UniProtKB/TrEMBL
  ENSSSCT00055036018.1 UniProtKB/TrEMBL
  ENSSSCT00055036105.1 UniProtKB/TrEMBL
  ENSSSCT00060012145.1 UniProtKB/TrEMBL
  ENSSSCT00060012149.1 UniProtKB/TrEMBL
  ENSSSCT00065077437.1 UniProtKB/TrEMBL
  ENSSSCT00065077452.1 UniProtKB/TrEMBL
  ENSSSCT00070035033.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.130.20 UniProtKB/TrEMBL
InterPro Ribosomal_L55_mit UniProtKB/TrEMBL
  Ribosomal_L55_sf UniProtKB/TrEMBL
KEGG Report ssc:100514395 UniProtKB/TrEMBL
NCBI Gene MRPL55 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34095 UniProtKB/TrEMBL
Pfam Mitoc_L55 UniProtKB/TrEMBL
UniProt A0A4X1ULI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QGV9 ENTREZGENE
  A0A8D0J5F2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XHE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NAM1 ENTREZGENE, UniProtKB/TrEMBL
  I3L9J0 ENTREZGENE
UniProt Secondary A0A5G2QGV9 UniProtKB/TrEMBL
  I3L9J0 UniProtKB/TrEMBL
VGNC ID VGNC:90377 ENTREZGENE