ATP13A2 (ATPase cation transporting 13A2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: ATP13A2 (ATPase cation transporting 13A2) Sus scrofa
Analyze
Symbol: ATP13A2
Name: ATPase cation transporting 13A2
RGD ID: 14094581
Description: ENCODES a protein that exhibits ABC-type polyamine transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN regulation of autophagosome size (ortholog); regulation of mitochondrion organization (ortholog); PARTICIPATES IN Parkinson's disease pathway; ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 33 (ortholog); FOUND IN autophagosome (inferred); autophagosome membrane (inferred); cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase 13A2; ATPase type 13A2; probable cation-transporting ATPase 13A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,618,319 - 75,638,591 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1675,618,317 - 75,638,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,931,621 - 69,951,929 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP13A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,618,319 - 75,638,591 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1675,618,317 - 75,638,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,931,621 - 69,951,929 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP13A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,985,958 - 17,011,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,985,958 - 17,011,928 (-)Ensemblhg38GRCh38
GRCh37117,312,453 - 17,338,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,185,040 - 17,210,854 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34117,057,758 - 17,083,573NCBI
Celera115,634,791 - 15,660,760 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,556,532 - 15,582,505 (-)NCBIHuRef
CHM1_1117,420,791 - 17,446,761 (-)NCBICHM1_1
T2T-CHM13v2.0116,796,381 - 16,822,349 (-)NCBIT2T-CHM13v2.0
Atp13a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,711,812 - 140,734,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,714,184 - 140,734,641 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384140,986,216 - 141,007,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4140,986,873 - 141,007,330 (+)Ensemblmm10GRCm38
MGSCv374140,542,788 - 140,563,616 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364140,259,004 - 140,279,406 (+)NCBIMGSCv36mm8
Celera4142,787,644 - 142,807,639 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.29NCBI
Atp13a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,575,727 - 158,595,157 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5158,575,749 - 158,595,156 (+)EnsemblGRCr8
mRatBN7.25153,292,722 - 153,312,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,292,751 - 153,312,139 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5155,981,005 - 156,000,631 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,754,276 - 157,773,902 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,743,460 - 157,763,086 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,512,208 - 159,531,631 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,512,285 - 159,531,637 (+)Ensemblrn6Rnor6.0
Rnor_5.05163,224,470 - 163,243,886 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45159,847,016 - 159,866,362 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5151,657,698 - 151,677,052 (+)NCBICelera
RGSC_v3.15159,857,176 - 159,876,542 (+)NCBI
Cytogenetic Map5q36NCBI
Atp13a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,806,009 - 1,823,344 (+)Ensembl
ChiLan1.0NW_0049555271,805,854 - 1,823,623 (+)NCBIChiLan1.0ChiLan1.0
ATP13A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,118,487 - 210,144,515 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,237,298 - 209,263,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,929,613 - 15,955,631 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,975,538 - 17,006,022 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,986,385 - 17,006,033 (-)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl116,975,544 - 17,006,022 (-)EnsemblpanPan2panpan1.1
ATP13A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,196,355 - 81,215,736 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,196,463 - 81,215,689 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha277,733,475 - 77,752,482 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0281,842,888 - 81,861,861 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,842,987 - 81,861,861 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,595,908 - 78,614,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,612,457 - 79,631,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,680,908 - 80,699,865 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp13a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505838,143,432 - 38,156,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,968,506 - 3,980,815 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,968,216 - 3,980,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP13A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,578,185 - 115,605,416 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,578,261 - 115,605,647 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666033515,071 - 542,556 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp13a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,614,827 - 2,631,793 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247642,614,541 - 2,631,972 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP13A2
215 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000029404   ⟹   ENSSSCP00000024802
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl675,618,319 - 75,638,591 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000031813   ⟹   ENSSSCP00000020054
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl675,618,416 - 75,638,591 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053686   ⟹   ENSSSCP00000043333
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl675,618,416 - 75,638,591 (-)Ensembl
RefSeq Acc Id: XM_005665049   ⟹   XP_005665106
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,591 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005665050   ⟹   XP_005665107
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005665051   ⟹   XP_005665108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013999018   ⟹   XP_013854472
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095421   ⟹   XP_020951080
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095422   ⟹   XP_020951081
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095424   ⟹   XP_020951083
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1675,618,317 - 75,638,561 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005665106   ⟸   XM_005665049
- Peptide Label: isoform X1
- UniProtKB: F1SUR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013854472   ⟸   XM_013999018
- Peptide Label: isoform X3
- UniProtKB: F1SUR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005665108   ⟸   XM_005665051
- Peptide Label: isoform X5
- UniProtKB: A0A8D1L3V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951083   ⟸   XM_021095424
- Peptide Label: isoform X7
- UniProtKB: A0A8D1L3V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951080   ⟸   XM_021095421
- Peptide Label: isoform X4
- UniProtKB: F1SUR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005665107   ⟸   XM_005665050
- Peptide Label: isoform X2
- UniProtKB: F1SUR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951081   ⟸   XM_021095422
- Peptide Label: isoform X6
- UniProtKB: A0A8D1L3V7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024802   ⟸   ENSSSCT00000029404
Ensembl Acc Id: ENSSSCP00000020054   ⟸   ENSSSCT00000031813
Ensembl Acc Id: ENSSSCP00000043333   ⟸   ENSSSCT00000053686
Protein Domains
P5B-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031082 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035030100 UniProtKB/TrEMBL
  ENSSSCG00040042403 UniProtKB/TrEMBL
  ENSSSCG00045028824 UniProtKB/TrEMBL
  ENSSSCG00050021005 UniProtKB/TrEMBL
  ENSSSCG00055010540 UniProtKB/TrEMBL
  ENSSSCG00065073867 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029404 ENTREZGENE
  ENSSSCT00000029404.4 UniProtKB/TrEMBL
  ENSSSCT00035039930.1 UniProtKB/TrEMBL
  ENSSSCT00040056764.1 UniProtKB/TrEMBL
  ENSSSCT00040057061.1 UniProtKB/TrEMBL
  ENSSSCT00040057275.1 UniProtKB/TrEMBL
  ENSSSCT00040057489.1 UniProtKB/TrEMBL
  ENSSSCT00040057730.1 UniProtKB/TrEMBL
  ENSSSCT00040058006.1 UniProtKB/TrEMBL
  ENSSSCT00045049197.1 UniProtKB/TrEMBL
  ENSSSCT00045049476.1 UniProtKB/TrEMBL
  ENSSSCT00045049782.1 UniProtKB/TrEMBL
  ENSSSCT00045050097.1 UniProtKB/TrEMBL
  ENSSSCT00050028328.1 UniProtKB/TrEMBL
  ENSSSCT00050028361.1 UniProtKB/TrEMBL
  ENSSSCT00050028418.1 UniProtKB/TrEMBL
  ENSSSCT00055020632.1 UniProtKB/TrEMBL
  ENSSSCT00055020747.1 UniProtKB/TrEMBL
  ENSSSCT00055020825.1 UniProtKB/TrEMBL
  ENSSSCT00055020899.1 UniProtKB/TrEMBL
  ENSSSCT00055020975.1 UniProtKB/TrEMBL
  ENSSSCT00055021027.1 UniProtKB/TrEMBL
  ENSSSCT00065101719.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_TPase_V UniProtKB/TrEMBL
  P5A-ATPase_N UniProtKB/TrEMBL
  P5B-type_ATPase UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene ATP13A2 ENTREZGENE
PANTHER CATION-TRANSPORTING ATPASE-RELATED UniProtKB/TrEMBL
  POLYAMINE-TRANSPORTING ATPASE 13A2 UniProtKB/TrEMBL
Pfam E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
  P5-ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8D1EJW6_PIG UniProtKB/TrEMBL
  A0A8D1EKA2_PIG UniProtKB/TrEMBL
  A0A8D1EKV5_PIG UniProtKB/TrEMBL
  A0A8D1ELQ9_PIG UniProtKB/TrEMBL
  A0A8D1EME4_PIG UniProtKB/TrEMBL
  A0A8D1II34_PIG UniProtKB/TrEMBL
  A0A8D1IMP9_PIG UniProtKB/TrEMBL
  A0A8D1ITC7_PIG UniProtKB/TrEMBL
  A0A8D1KBY2_PIG UniProtKB/TrEMBL
  A0A8D1L3V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q9A2_PIG UniProtKB/TrEMBL
  A0A8D1QAI2_PIG UniProtKB/TrEMBL
  A0A8D1QAN3_PIG UniProtKB/TrEMBL
  A0A8D1QB39_PIG UniProtKB/TrEMBL
  A0A8D1QEL9_PIG UniProtKB/TrEMBL
  A0A8D1TZY6_PIG UniProtKB/TrEMBL
  F1SUR9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85638 ENTREZGENE