STPG4 (sperm-tail PG-rich repeat containing 4) - Rat Genome Database

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Gene: STPG4 (sperm-tail PG-rich repeat containing 4) Sus scrofa
Analyze
Symbol: STPG4
Name: sperm-tail PG-rich repeat containing 4
RGD ID: 14094403
Description: ENCODES a protein that exhibits calcium ion binding (inferred); chromatin binding (inferred); histone binding (inferred); INVOLVED IN C-5 methylation of cytosine (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C3H2orf61; uncharacterized protein C2orf61 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,372,045 - 93,438,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,386,523 - 93,438,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,516,465 - 99,563,978 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
female pronucleus  (IBA,IEA)
germinal vesicle  (IBA,IEA)
male pronucleus  (IBA,IEA)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
STPG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,372,045 - 93,438,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,386,523 - 93,438,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,516,465 - 99,563,978 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STPG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl247,045,538 - 47,155,308 (-)EnsemblGRCh38hg38GRCh38
GRCh38247,086,991 - 47,155,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37247,314,130 - 47,382,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,209,091 - 47,235,930 (-)NCBINCBI36hg18NCBI36
Celera247,152,977 - 47,221,350 (-)NCBI
Cytogenetic Map2p21NCBI
HuRef247,051,202 - 47,119,655 (-)NCBIHuRef
CHM1_1247,244,382 - 47,312,761 (-)NCBICHM1_1
Stpg4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,696,998 - 87,735,526 (-)NCBIGRCm39mm39
GRCm39 Ensembl1787,696,999 - 87,735,169 (-)Ensembl
GRCm381787,389,570 - 87,428,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1787,389,571 - 87,427,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv371787,788,911 - 87,827,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv361787,297,897 - 87,336,067 (-)NCBImm8
Celera1791,786,747 - 91,825,778 (-)NCBICelera
Cytogenetic Map17E4NCBI
Stpg4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.267,108,827 - 7,158,519 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl67,108,869 - 7,151,390 (+)Ensembl
Rnor_6.0611,014,596 - 11,063,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl611,022,034 - 11,063,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0621,002,682 - 21,051,287 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,902,817 - 10,947,732 (-)NCBIRGSC3.4rn4RGSC3.4
Celera66,860,173 - 6,901,319 (+)NCBICelera
Cytogenetic Map6q12NCBI
Stpg4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544113,925,403 - 13,969,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544113,926,926 - 13,969,316 (-)NCBIChiLan1.0ChiLan1.0
STPG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A48,131,530 - 48,199,723 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A48,131,547 - 48,199,596 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A47,201,536 - 47,271,253 (-)NCBIMhudiblu_PPA_v0panPan3
STPG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,255,715 - 49,294,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1049,255,723 - 49,294,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1049,109,366 - 49,147,983 (-)NCBI
ROS_Cfam_1.01050,126,166 - 50,164,993 (-)NCBI
UMICH_Zoey_3.11049,834,129 - 49,872,690 (-)NCBI
UNSW_CanFamBas_1.01050,123,664 - 50,162,186 (-)NCBI
UU_Cfam_GSD_1.01050,307,790 - 50,346,314 (-)NCBI
Stpg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629233,797,317 - 33,838,489 (+)NCBI
SpeTri2.0NW_0049365085,229,734 - 5,267,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STPG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,046,418 - 60,150,224 (+)NCBI
ChlSab1.1 Ensembl1460,047,449 - 60,104,570 (+)Ensembl
Vero_WHO_p1.0NW_02366604551,741,463 - 51,800,004 (-)NCBI
Stpg4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473828,481,864 - 28,525,079 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003481221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000009233   ⟹   ENSSSCP00000008999
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl393,389,979 - 93,438,068 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000009234   ⟹   ENSSSCP00000009000
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl393,372,045 - 93,386,374 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062446   ⟹   ENSSSCP00000052711
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl393,372,045 - 93,386,374 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080297   ⟹   ENSSSCP00000063070
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl393,384,163 - 93,438,068 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087158   ⟹   ENSSSCP00000060120
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl393,393,484 - 93,438,068 (+)Ensembl
RefSeq Acc Id: XM_003481221   ⟹   XP_003481269
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1393,386,523 - 93,438,070 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003481269 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003481269   ⟸   XM_003481221
- Sequence:
RefSeq Acc Id: ENSSSCP00000008999   ⟸   ENSSSCT00000009233
RefSeq Acc Id: ENSSSCP00000009000   ⟸   ENSSSCT00000009234
RefSeq Acc Id: ENSSSCP00000063070   ⟸   ENSSSCT00000080297
RefSeq Acc Id: ENSSSCP00000052711   ⟸   ENSSSCT00000062446
RefSeq Acc Id: ENSSSCP00000060120   ⟸   ENSSSCT00000087158
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008433 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000008999 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000052711 UniProtKB/TrEMBL
  ENSSSCP00000060120 UniProtKB/TrEMBL
  ENSSSCP00000063070 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009233 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000062446 UniProtKB/TrEMBL
  ENSSSCT00000080297 UniProtKB/TrEMBL
  ENSSSCT00000087158 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  SHIPPO-rpt UniProtKB/TrEMBL
  STPG4 UniProtKB/TrEMBL
KEGG Report ssc:100522546 UniProtKB/TrEMBL
NCBI Gene STPG4 ENTREZGENE
PANTHER PTHR35678 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  SHIPPO-rpt UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287B857_PIG UniProtKB/TrEMBL
  A0A5G2QDI9_PIG UniProtKB/TrEMBL
  A0A5G2QEH3_PIG UniProtKB/TrEMBL
  F1SQH0_PIG UniProtKB/TrEMBL