CELF6 (CUGBP Elav-like family member 6) - Rat Genome Database

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Gene: CELF6 (CUGBP Elav-like family member 6) Sus scrofa
Analyze
Symbol: CELF6
Name: CUGBP Elav-like family member 6
RGD ID: 14094316
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN synaptic transmission, serotonergic (ortholog); vocalization behavior (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,930,982 - 60,960,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,931,100 - 60,960,929 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,473,553 - 65,503,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)
ribonucleoprotein complex  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CELF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,930,982 - 60,960,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,931,100 - 60,960,929 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,473,553 - 65,503,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CELF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,284,727 - 72,320,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,284,727 - 72,320,157 (-)EnsemblGRCh38hg38GRCh38
GRCh371572,577,068 - 72,612,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361570,364,123 - 70,399,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341570,364,432 - 70,399,282NCBI
Celera1549,463,203 - 49,498,641 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1549,407,446 - 49,442,951 (-)NCBIHuRef
CHM1_11572,695,058 - 72,730,524 (-)NCBICHM1_1
T2T-CHM13v2.01570,101,200 - 70,136,631 (-)NCBIT2T-CHM13v2.0
Celf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,485,587 - 59,516,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,485,200 - 59,514,575 (+)EnsemblGRCm39 Ensembl
GRCm38959,578,287 - 59,609,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,577,917 - 59,607,292 (+)EnsemblGRCm38mm10GRCm38
MGSCv37959,426,144 - 59,455,099 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,376,343 - 59,405,298 (+)NCBIMGSCv36mm8
Celera956,805,389 - 56,834,253 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.02NCBI
Celf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8868,870,902 - 68,901,863 (+)NCBIGRCr8
mRatBN7.2859,975,095 - 60,006,060 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,975,088 - 60,005,041 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx865,497,375 - 65,527,242 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0863,770,295 - 63,800,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0861,639,742 - 61,669,615 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0864,364,491 - 64,428,452 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl864,364,741 - 64,428,386 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0864,126,553 - 64,139,056 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0864,187,550 - 64,191,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,401,862 - 63,433,540 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1863,420,852 - 63,452,594 (+)NCBI
Celera859,416,942 - 59,446,591 (+)NCBICelera
Cytogenetic Map8q24NCBI
Celf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,822,125 - 4,855,238 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,822,125 - 4,853,572 (+)NCBIChiLan1.0ChiLan1.0
CELF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,783,357 - 35,813,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,720,282 - 35,750,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03035,988,166 - 36,018,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3035,989,379 - 36,018,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13035,941,101 - 35,971,303 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03035,969,124 - 35,999,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03036,223,738 - 36,253,969 (-)NCBIUU_Cfam_GSD_1.0
Celf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640113,818,313 - 113,852,518 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647131,666,297 - 31,700,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647131,668,520 - 31,700,581 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CELF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12611,135,021 - 11,169,351 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2611,135,088 - 11,166,493 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048130,406,299 - 130,462,759 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,722,821 - 1,750,855 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,722,820 - 1,759,602 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CELF6
491 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 3 23
Below cutoff 4 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002157   ⟹   ENSSSCP00000002106
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,943,997 - 60,960,119 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066981   ⟹   ENSSSCP00000067465
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,954,266 - 60,960,119 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067349   ⟹   ENSSSCP00000065972
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,930,982 - 60,960,119 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000095294   ⟹   ENSSSCP00000075744
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,930,982 - 60,960,119 (+)Ensembl
RefSeq Acc Id: XM_003128507   ⟹   XP_003128555
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1760,931,100 - 60,960,929 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003128555   ⟸   XM_003128507
- UniProtKB: A0A4X1TGM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065972   ⟸   ENSSSCT00000067349
RefSeq Acc Id: ENSSSCP00000002106   ⟸   ENSSSCT00000002157
RefSeq Acc Id: ENSSSCP00000075744   ⟸   ENSSSCT00000095294
RefSeq Acc Id: ENSSSCP00000067465   ⟸   ENSSSCT00000066981
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001928 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025045466 UniProtKB/TrEMBL
  ENSSSCG00035013097 UniProtKB/TrEMBL
  ENSSSCG00045037428 UniProtKB/TrEMBL
  ENSSSCG00055019466 UniProtKB/TrEMBL
  ENSSSCG00060066445 UniProtKB/TrEMBL
  ENSSSCG00065053533 UniProtKB/TrEMBL
  ENSSSCG00070008978 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002157.5 UniProtKB/TrEMBL
  ENSSSCT00000066981.1 UniProtKB/TrEMBL
  ENSSSCT00000067349 ENTREZGENE
  ENSSSCT00000067349.2 UniProtKB/TrEMBL
  ENSSSCT00000095294.1 UniProtKB/TrEMBL
  ENSSSCT00025061921.1 UniProtKB/TrEMBL
  ENSSSCT00035016548.1 UniProtKB/TrEMBL
  ENSSSCT00045064828.1 UniProtKB/TrEMBL
  ENSSSCT00055038320.1 UniProtKB/TrEMBL
  ENSSSCT00060090883.1 UniProtKB/TrEMBL
  ENSSSCT00065073324.1 UniProtKB/TrEMBL
  ENSSSCT00070017449.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro CELF3/4/5/6_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene CELF6 ENTREZGENE
PANTHER CUGBP ELAV-LIKE FAMILY MEMBER 6 UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A4X1TGM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QM68_PIG UniProtKB/TrEMBL
  A0A5G2QRR6_PIG UniProtKB/TrEMBL
  A0A8W4FA83_PIG UniProtKB/TrEMBL
  F1SHM1_PIG UniProtKB/TrEMBL